Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4760 and BT4761 are separated by 952 nucleotides BT4761 and BT4762 are separated by 36 nucleotides BT4762 and BT4763 are separated by 2 nucleotides BT4763 and BT4764 are separated by 3 nucleotides
BT4760: BT4760 - hypothetical protein (NCBI ptt file), at 6,246,751 to 6,247,119
BT4760
BT4761: BT4761 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,072 to 6,248,212
BT4761
BT4762: BT4762 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,249 to 6,248,686
BT4762
BT4763: BT4763 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,689 to 6,249,183
BT4763
BT4764: BT4764 - hypothetical protein (NCBI ptt file), at 6,249,187 to 6,250,119
BT4764
Position (kb)
6248
6249 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6247.433 kb on - strand at 6247.464 kb on - strand at 6247.464 kb on - strand at 6247.464 kb on - strand at 6247.485 kb on + strand at 6247.513 kb on - strand at 6247.513 kb on - strand at 6247.531 kb on - strand at 6247.531 kb on - strand at 6247.531 kb on - strand at 6247.543 kb on - strand at 6247.555 kb on - strand at 6247.641 kb on - strand at 6247.646 kb on + strand at 6247.666 kb on + strand at 6247.667 kb on - strand at 6247.681 kb on - strand at 6247.696 kb on + strand at 6247.743 kb on - strand at 6247.743 kb on - strand at 6247.747 kb on - strand at 6247.759 kb on - strand at 6247.767 kb on - strand at 6247.771 kb on - strand at 6247.791 kb on - strand at 6247.794 kb on + strand at 6247.797 kb on - strand at 6247.807 kb on - strand at 6247.811 kb on - strand at 6247.811 kb on - strand at 6247.871 kb on - strand at 6247.895 kb on - strand at 6247.907 kb on + strand at 6248.016 kb on - strand at 6248.016 kb on - strand at 6248.072 kb on - strand at 6248.072 kb on - strand at 6248.239 kb on - strand at 6248.239 kb on - strand at 6248.306 kb on - strand, within BT4762 at 6248.437 kb on - strand, within BT4762 at 6248.478 kb on - strand, within BT4762 at 6248.478 kb on - strand, within BT4762 at 6248.478 kb on - strand, within BT4762 at 6248.478 kb on - strand, within BT4762 at 6248.534 kb on - strand, within BT4762 at 6248.651 kb on - strand at 6248.651 kb on - strand at 6248.665 kb on - strand at 6248.989 kb on + strand, within BT4763 at 6248.992 kb on - strand, within BT4763 at 6249.017 kb on - strand, within BT4763 at 6249.019 kb on - strand, within BT4763 at 6249.181 kb on + strand at 6249.192 kb on + strand at 6249.208 kb on + strand at 6249.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM remove 6,247,433 - -2.3 6,247,464 - -1.4 6,247,464 - -1.0 6,247,464 - -0.4 6,247,485 + -1.0 6,247,513 - -0.9 6,247,513 - -0.9 6,247,531 - -2.0 6,247,531 - -0.5 6,247,531 - -0.0 6,247,543 - -1.6 6,247,555 - -0.0 6,247,641 - -1.6 6,247,646 + -0.0 6,247,666 + -1.0 6,247,667 - -0.7 6,247,681 - -0.0 6,247,696 + -0.8 6,247,743 - -1.5 6,247,743 - -2.9 6,247,747 - -2.0 6,247,759 - -1.6 6,247,767 - -1.2 6,247,771 - -1.2 6,247,791 - -2.5 6,247,794 + -2.0 6,247,797 - -1.0 6,247,807 - -4.5 6,247,811 - -0.9 6,247,811 - -0.4 6,247,871 - -1.1 6,247,895 - +0.4 6,247,907 + +1.0 6,248,016 - -0.6 6,248,016 - +0.6 6,248,072 - -0.4 6,248,072 - -1.0 6,248,239 - -0.6 6,248,239 - +0.7 6,248,306 - BT4762 0.13 -1.0 6,248,437 - BT4762 0.43 -1.0 6,248,478 - BT4762 0.52 -2.6 6,248,478 - BT4762 0.52 -2.6 6,248,478 - BT4762 0.52 +1.0 6,248,478 - BT4762 0.52 -0.0 6,248,534 - BT4762 0.65 -2.3 6,248,651 - -0.0 6,248,651 - -2.0 6,248,665 - -1.9 6,248,989 + BT4763 0.61 -1.6 6,248,992 - BT4763 0.61 -1.0 6,249,017 - BT4763 0.66 -1.5 6,249,019 - BT4763 0.67 +0.3 6,249,181 + -2.3 6,249,192 + -3.1 6,249,208 + -2.0 6,249,209 - -0.4
Or see this region's nucleotide sequence