Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4761

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4760 and BT4761 are separated by 952 nucleotidesBT4761 and BT4762 are separated by 36 nucleotidesBT4762 and BT4763 are separated by 2 nucleotidesBT4763 and BT4764 are separated by 3 nucleotides BT4760: BT4760 - hypothetical protein (NCBI ptt file), at 6,246,751 to 6,247,119 BT4760 BT4761: BT4761 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,072 to 6,248,212 BT4761 BT4762: BT4762 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,249 to 6,248,686 BT4762 BT4763: BT4763 - conserved protein found in conjugate transposon (NCBI ptt file), at 6,248,689 to 6,249,183 BT4763 BT4764: BT4764 - hypothetical protein (NCBI ptt file), at 6,249,187 to 6,250,119 BT4764 Position (kb) 6248 6249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6247.433 kb on - strandat 6247.464 kb on - strandat 6247.464 kb on - strandat 6247.464 kb on - strandat 6247.485 kb on + strandat 6247.513 kb on - strandat 6247.513 kb on - strandat 6247.531 kb on - strandat 6247.531 kb on - strandat 6247.531 kb on - strandat 6247.543 kb on - strandat 6247.555 kb on - strandat 6247.641 kb on - strandat 6247.646 kb on + strandat 6247.666 kb on + strandat 6247.667 kb on - strandat 6247.681 kb on - strandat 6247.696 kb on + strandat 6247.743 kb on - strandat 6247.743 kb on - strandat 6247.747 kb on - strandat 6247.759 kb on - strandat 6247.767 kb on - strandat 6247.771 kb on - strandat 6247.791 kb on - strandat 6247.794 kb on + strandat 6247.797 kb on - strandat 6247.807 kb on - strandat 6247.811 kb on - strandat 6247.811 kb on - strandat 6247.871 kb on - strandat 6247.895 kb on - strandat 6247.907 kb on + strandat 6248.016 kb on - strandat 6248.016 kb on - strandat 6248.072 kb on - strandat 6248.072 kb on - strandat 6248.239 kb on - strandat 6248.239 kb on - strandat 6248.306 kb on - strand, within BT4762at 6248.437 kb on - strand, within BT4762at 6248.478 kb on - strand, within BT4762at 6248.478 kb on - strand, within BT4762at 6248.478 kb on - strand, within BT4762at 6248.478 kb on - strand, within BT4762at 6248.534 kb on - strand, within BT4762at 6248.651 kb on - strandat 6248.651 kb on - strandat 6248.665 kb on - strandat 6248.989 kb on + strand, within BT4763at 6248.992 kb on - strand, within BT4763at 6249.017 kb on - strand, within BT4763at 6249.019 kb on - strand, within BT4763at 6249.181 kb on + strandat 6249.192 kb on + strandat 6249.208 kb on + strandat 6249.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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6,247,433 - -2.3
6,247,464 - -1.4
6,247,464 - -1.0
6,247,464 - -0.4
6,247,485 + -1.0
6,247,513 - -0.9
6,247,513 - -0.9
6,247,531 - -2.0
6,247,531 - -0.5
6,247,531 - -0.0
6,247,543 - -1.6
6,247,555 - -0.0
6,247,641 - -1.6
6,247,646 + -0.0
6,247,666 + -1.0
6,247,667 - -0.7
6,247,681 - -0.0
6,247,696 + -0.8
6,247,743 - -1.5
6,247,743 - -2.9
6,247,747 - -2.0
6,247,759 - -1.6
6,247,767 - -1.2
6,247,771 - -1.2
6,247,791 - -2.5
6,247,794 + -2.0
6,247,797 - -1.0
6,247,807 - -4.5
6,247,811 - -0.9
6,247,811 - -0.4
6,247,871 - -1.1
6,247,895 - +0.4
6,247,907 + +1.0
6,248,016 - -0.6
6,248,016 - +0.6
6,248,072 - -0.4
6,248,072 - -1.0
6,248,239 - -0.6
6,248,239 - +0.7
6,248,306 - BT4762 0.13 -1.0
6,248,437 - BT4762 0.43 -1.0
6,248,478 - BT4762 0.52 -2.6
6,248,478 - BT4762 0.52 -2.6
6,248,478 - BT4762 0.52 +1.0
6,248,478 - BT4762 0.52 -0.0
6,248,534 - BT4762 0.65 -2.3
6,248,651 - -0.0
6,248,651 - -2.0
6,248,665 - -1.9
6,248,989 + BT4763 0.61 -1.6
6,248,992 - BT4763 0.61 -1.0
6,249,017 - BT4763 0.66 -1.5
6,249,019 - BT4763 0.67 +0.3
6,249,181 + -2.3
6,249,192 + -3.1
6,249,208 + -2.0
6,249,209 - -0.4

Or see this region's nucleotide sequence