Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4336

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT4334 and BT4335 are separated by 19 nucleotidesBT4335 and BT4336 are separated by 60 nucleotidesBT4336 and BT4337 are separated by 115 nucleotides BT4334: BT4334 - FtsK/SpoIIIE family protein (NCBI ptt file), at 5,707,006 to 5,709,501 BT4334 BT4335: BT4335 - conserved hypothetical protein (NCBI ptt file), at 5,709,521 to 5,710,168 BT4335 BT4336: BT4336 - thioredoxin reductase (NCBI ptt file), at 5,710,229 to 5,711,179 BT4336 BT4337: BT4337 - beta-hexosaminidase precursor (NCBI ptt file), at 5,711,295 to 5,713,829 BT4337 Position (kb) 5710 5711 5712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5710.161 kb on + strandat 5710.161 kb on + strandat 5711.173 kb on + strandat 5711.216 kb on + strandat 5711.216 kb on + strandat 5711.216 kb on + strandat 5711.217 kb on - strandat 5711.231 kb on + strandat 5711.296 kb on + strandat 5711.299 kb on + strandat 5711.300 kb on - strandat 5711.300 kb on - strandat 5711.403 kb on + strandat 5711.510 kb on + strandat 5711.510 kb on + strandat 5711.513 kb on - strandat 5711.699 kb on + strand, within BT4337at 5711.700 kb on - strand, within BT4337at 5711.700 kb on - strand, within BT4337at 5711.802 kb on - strand, within BT4337at 5711.926 kb on + strand, within BT4337at 5711.927 kb on - strand, within BT4337at 5711.927 kb on - strand, within BT4337at 5712.039 kb on - strand, within BT4337

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
remove
5,710,161 + -2.8
5,710,161 + -1.6
5,711,173 + +0.0
5,711,216 + -1.7
5,711,216 + -3.7
5,711,216 + +0.0
5,711,217 - -0.6
5,711,231 + -1.1
5,711,296 + +0.0
5,711,299 + -0.8
5,711,300 - -0.8
5,711,300 - -2.8
5,711,403 + -1.0
5,711,510 + +2.3
5,711,510 + +1.0
5,711,513 - +0.6
5,711,699 + BT4337 0.16 -1.2
5,711,700 - BT4337 0.16 -2.0
5,711,700 - BT4337 0.16 +0.0
5,711,802 - BT4337 0.20 -2.3
5,711,926 + BT4337 0.25 -2.6
5,711,927 - BT4337 0.25 +1.3
5,711,927 - BT4337 0.25 -1.6
5,712,039 - BT4337 0.29 +0.0

Or see this region's nucleotide sequence