Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4206 and BT4207 are separated by 11 nucleotides BT4207 and BT4208 are separated by 81 nucleotides
BT4206: BT4206 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file), at 5,542,254 to 5,543,639
BT4206
BT4207: BT4207 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (NCBI ptt file), at 5,543,651 to 5,544,691
BT4207
BT4208: BT4208 - phosphohydrolase (NCBI ptt file), at 5,544,773 to 5,546,002
BT4208
Position (kb) 5543
5544
5545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5542.660 kb on - strand, within BT4206 at 5542.660 kb on - strand, within BT4206 at 5542.709 kb on - strand, within BT4206 at 5542.709 kb on - strand, within BT4206 at 5544.775 kb on - strand at 5544.775 kb on - strand at 5544.775 kb on - strand at 5544.775 kb on - strand at 5544.802 kb on - strand at 5544.802 kb on - strand at 5544.802 kb on - strand at 5544.872 kb on - strand at 5544.886 kb on - strand at 5544.890 kb on - strand at 5544.893 kb on - strand at 5544.919 kb on - strand, within BT4208 at 5544.919 kb on - strand, within BT4208 at 5544.919 kb on - strand, within BT4208 at 5544.919 kb on - strand, within BT4208 at 5544.919 kb on - strand, within BT4208 at 5545.014 kb on - strand, within BT4208 at 5545.085 kb on - strand, within BT4208 at 5545.122 kb on - strand, within BT4208 at 5545.219 kb on - strand, within BT4208 at 5545.219 kb on - strand, within BT4208 at 5545.301 kb on - strand at 5545.486 kb on - strand, within BT4208 at 5545.598 kb on - strand, within BT4208 at 5545.679 kb on - strand, within BT4208
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM remove 5,542,660 - BT4206 0.29 -2.0 5,542,660 - BT4206 0.29 -1.6 5,542,709 - BT4206 0.33 -1.0 5,542,709 - BT4206 0.33 -2.0 5,544,775 - -3.0 5,544,775 - -1.0 5,544,775 - +2.7 5,544,775 - -3.7 5,544,802 - +0.1 5,544,802 - +1.5 5,544,802 - -0.2 5,544,872 - +0.1 5,544,886 - -0.3 5,544,890 - -0.9 5,544,893 - -0.0 5,544,919 - BT4208 0.12 -0.4 5,544,919 - BT4208 0.12 +0.2 5,544,919 - BT4208 0.12 -2.8 5,544,919 - BT4208 0.12 +1.2 5,544,919 - BT4208 0.12 +0.4 5,545,014 - BT4208 0.20 +0.4 5,545,085 - BT4208 0.25 +1.2 5,545,122 - BT4208 0.28 -1.0 5,545,219 - BT4208 0.36 -0.0 5,545,219 - BT4208 0.36 -0.7 5,545,301 - -0.0 5,545,486 - BT4208 0.58 +0.2 5,545,598 - BT4208 0.67 -0.6 5,545,679 - BT4208 0.74 -0.6
Or see this region's nucleotide sequence