Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3948 and BT3949 are separated by 118 nucleotides BT3949 and BT3950 are separated by 29 nucleotides BT3950 and BT3951 are separated by 195 nucleotides
BT3948: BT3948 - conserved hypothetical protein, putative exopolyphosphatase-related protein (NCBI ptt file), at 5,124,765 to 5,125,802
BT3948
BT3949: BT3949 - hypothetical protein (NCBI ptt file), at 5,125,921 to 5,126,565
BT3949
BT3950: BT3950 - phosphoglucomutase/phosphomannomutase (NCBI ptt file), at 5,126,595 to 5,127,983
BT3950
BT3951: BT3951 - transcriptional regulator (NCBI ptt file), at 5,128,179 to 5,132,153
BT3951
Position (kb) 5126
5127
5128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5125.814 kb on + strand at 5126.574 kb on + strand at 5126.594 kb on + strand at 5127.961 kb on + strand at 5127.996 kb on - strand at 5128.029 kb on - strand at 5128.068 kb on + strand at 5128.068 kb on + strand at 5128.068 kb on + strand at 5128.137 kb on + strand at 5128.152 kb on + strand at 5128.153 kb on - strand at 5128.156 kb on - strand at 5128.179 kb on - strand at 5128.205 kb on + strand at 5128.230 kb on - strand at 5128.246 kb on + strand at 5128.246 kb on - strand at 5128.299 kb on - strand at 5128.306 kb on + strand at 5128.307 kb on - strand at 5128.349 kb on + strand at 5128.353 kb on + strand at 5128.354 kb on - strand at 5128.439 kb on + strand at 5128.440 kb on - strand at 5128.440 kb on - strand at 5128.440 kb on - strand at 5128.440 kb on - strand at 5128.440 kb on - strand at 5128.480 kb on + strand at 5128.480 kb on + strand at 5128.481 kb on - strand at 5128.485 kb on - strand at 5128.485 kb on - strand at 5128.583 kb on + strand, within BT3951 at 5128.583 kb on + strand, within BT3951 at 5128.586 kb on + strand, within BT3951 at 5128.586 kb on + strand, within BT3951 at 5128.587 kb on - strand, within BT3951 at 5128.617 kb on + strand, within BT3951 at 5128.620 kb on + strand, within BT3951 at 5128.620 kb on + strand, within BT3951 at 5128.621 kb on - strand, within BT3951 at 5128.668 kb on - strand, within BT3951 at 5128.717 kb on + strand, within BT3951 at 5128.720 kb on - strand, within BT3951 at 5128.805 kb on + strand, within BT3951 at 5128.805 kb on + strand, within BT3951 at 5128.840 kb on - strand, within BT3951 at 5128.840 kb on - strand, within BT3951 at 5128.899 kb on + strand, within BT3951 at 5128.900 kb on - strand, within BT3951 at 5128.904 kb on + strand, within BT3951 at 5128.905 kb on - strand, within BT3951 at 5128.907 kb on - strand, within BT3951 at 5128.920 kb on - strand, within BT3951 at 5128.935 kb on - strand, within BT3951 at 5128.955 kb on + strand, within BT3951 at 5128.956 kb on - strand at 5128.960 kb on - strand, within BT3951 at 5128.981 kb on + strand, within BT3951
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM remove 5,125,814 + -2.9 5,126,574 + -0.0 5,126,594 + -0.0 5,127,961 + -1.0 5,127,996 - -2.4 5,128,029 - -1.2 5,128,068 + -2.9 5,128,068 + -0.0 5,128,068 + -1.4 5,128,137 + -0.6 5,128,152 + -0.6 5,128,153 - -1.9 5,128,156 - -0.9 5,128,179 - -1.0 5,128,205 + -2.9 5,128,230 - -1.4 5,128,246 + -1.0 5,128,246 - -1.4 5,128,299 - -0.8 5,128,306 + -0.0 5,128,307 - -2.4 5,128,349 + -2.0 5,128,353 + -0.4 5,128,354 - -0.0 5,128,439 + -1.2 5,128,440 - -0.8 5,128,440 - -0.3 5,128,440 - -3.1 5,128,440 - -0.0 5,128,440 - -0.7 5,128,480 + -1.0 5,128,480 + -0.5 5,128,481 - -0.0 5,128,485 - -1.6 5,128,485 - -3.6 5,128,583 + BT3951 0.10 -0.0 5,128,583 + BT3951 0.10 -0.0 5,128,586 + BT3951 0.10 -0.0 5,128,586 + BT3951 0.10 -1.0 5,128,587 - BT3951 0.10 -0.0 5,128,617 + BT3951 0.11 -1.2 5,128,620 + BT3951 0.11 +1.0 5,128,620 + BT3951 0.11 -4.3 5,128,621 - BT3951 0.11 -0.6 5,128,668 - BT3951 0.12 -0.0 5,128,717 + BT3951 0.14 -3.5 5,128,720 - BT3951 0.14 -0.6 5,128,805 + BT3951 0.16 -1.6 5,128,805 + BT3951 0.16 -2.0 5,128,840 - BT3951 0.17 -1.0 5,128,840 - BT3951 0.17 +1.0 5,128,899 + BT3951 0.18 -1.9 5,128,900 - BT3951 0.18 -1.9 5,128,904 + BT3951 0.18 -2.9 5,128,905 - BT3951 0.18 -0.4 5,128,907 - BT3951 0.18 -2.6 5,128,920 - BT3951 0.19 -0.0 5,128,935 - BT3951 0.19 -0.6 5,128,955 + BT3951 0.20 -1.6 5,128,956 - +2.5 5,128,960 - BT3951 0.20 -1.0 5,128,981 + BT3951 0.20 -0.0
Or see this region's nucleotide sequence