Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3837

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3836 and BT3837 are separated by 77 nucleotidesBT3837 and BT3838 are separated by 75 nucleotidesBT3838 and BT3839 overlap by 4 nucleotides BT3836: BT3836 - putative phosphoglycerate dehydrogenase (NCBI ptt file), at 4,991,685 to 4,992,998 BT3836 BT3837: BT3837 - ABC transporter ATP-binding protein (NCBI ptt file), at 4,993,076 to 4,993,843 BT3837 BT3838: BT3838 - conserved hypothetical protein (NCBI ptt file), at 4,993,919 to 4,994,662 BT3838 BT3839: BT3839 - ABC transporter ATP-binding protein (NCBI ptt file), at 4,994,659 to 4,995,429 BT3839 Position (kb) 4993 4994Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4992.997 kb on - strandat 4992.997 kb on - strandat 4993.004 kb on - strandat 4993.005 kb on + strandat 4993.005 kb on + strandat 4993.006 kb on - strandat 4993.012 kb on - strandat 4993.069 kb on - strandat 4993.069 kb on - strandat 4993.918 kb on + strandat 4993.918 kb on + strandat 4993.950 kb on - strandat 4993.950 kb on - strandat 4993.950 kb on - strandat 4993.951 kb on + strandat 4993.990 kb on + strandat 4994.194 kb on + strand, within BT3838at 4994.459 kb on - strand, within BT3838at 4994.553 kb on + strand, within BT3838at 4994.588 kb on - strandat 4994.716 kb on - strandat 4994.836 kb on + strand, within BT3839

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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4,992,997 - -3.0
4,992,997 - +1.8
4,993,004 - -1.8
4,993,005 + -0.3
4,993,005 + -1.0
4,993,006 - -1.7
4,993,012 - -1.8
4,993,069 - -2.0
4,993,069 - -2.6
4,993,918 + -2.0
4,993,918 + -1.0
4,993,950 - -2.6
4,993,950 - -1.4
4,993,950 - -1.2
4,993,951 + +1.0
4,993,990 + -0.0
4,994,194 + BT3838 0.37 -1.0
4,994,459 - BT3838 0.73 -0.0
4,994,553 + BT3838 0.85 -1.6
4,994,588 - -2.0
4,994,716 - -0.0
4,994,836 + BT3839 0.23 -0.6

Or see this region's nucleotide sequence