Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3713

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT3712 and BT3713 overlap by 4 nucleotidesBT3713 and BT3714 are separated by 94 nucleotides BT3712: BT3712 - ribosomal large subunit pseudouridine synthase D (NCBI ptt file), at 4,822,165 to 4,823,238 BT3712 BT3713: BT3713 - D-alanine--D-alanine ligase (NCBI ptt file), at 4,823,235 to 4,824,209 BT3713 BT3714: BT3714 - conserved hypothetical protein (NCBI ptt file), at 4,824,304 to 4,825,452 BT3714 Position (kb) 4823 4824 4825Strain fitness (log2 ratio) -3 -2 -1 0 1at 4822.243 kb on + strandat 4822.300 kb on + strand, within BT3712at 4822.399 kb on + strand, within BT3712at 4822.407 kb on + strand, within BT3712at 4822.511 kb on + strand, within BT3712at 4822.511 kb on + strand, within BT3712at 4822.618 kb on + strand, within BT3712at 4822.668 kb on + strand, within BT3712at 4822.668 kb on + strand, within BT3712at 4822.851 kb on + strand, within BT3712at 4822.915 kb on + strand, within BT3712at 4822.937 kb on + strand, within BT3712at 4822.953 kb on + strand, within BT3712at 4822.983 kb on + strand, within BT3712at 4823.040 kb on + strand, within BT3712at 4823.073 kb on + strand, within BT3712at 4823.155 kb on + strandat 4823.160 kb on + strandat 4823.160 kb on + strandat 4823.216 kb on + strandat 4823.231 kb on + strandat 4824.228 kb on + strandat 4824.228 kb on + strandat 4824.235 kb on + strandat 4824.276 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
remove
4,822,243 + -0.1
4,822,300 + BT3712 0.13 -1.4
4,822,399 + BT3712 0.22 -1.1
4,822,407 + BT3712 0.23 -0.1
4,822,511 + BT3712 0.32 -2.9
4,822,511 + BT3712 0.32 -0.1
4,822,618 + BT3712 0.42 -1.1
4,822,668 + BT3712 0.47 -2.1
4,822,668 + BT3712 0.47 -1.1
4,822,851 + BT3712 0.64 -3.1
4,822,915 + BT3712 0.70 +1.2
4,822,937 + BT3712 0.72 -0.1
4,822,953 + BT3712 0.73 -0.1
4,822,983 + BT3712 0.76 -1.1
4,823,040 + BT3712 0.81 -1.1
4,823,073 + BT3712 0.85 -1.1
4,823,155 + -0.1
4,823,160 + -0.1
4,823,160 + -2.1
4,823,216 + -2.7
4,823,231 + -0.1
4,824,228 + -0.1
4,824,228 + -0.1
4,824,235 + -0.6
4,824,276 + -1.7

Or see this region's nucleotide sequence