Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3693

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3692 and BT3693 are separated by 28 nucleotidesBT3693 and BT3694 are separated by 34 nucleotides BT3692: BT3692 - phosphate acetyltransferase (NCBI ptt file), at 4,795,359 to 4,796,378 BT3692 BT3693: BT3693 - acetate kinase (NCBI ptt file), at 4,796,407 to 4,797,606 BT3693 BT3694: BT3694 - glycosyltransferase (NCBI ptt file), at 4,797,641 to 4,798,855 BT3694 Position (kb) 4796 4797 4798Strain fitness (log2 ratio) -1 0 1at 4796.376 kb on + strandat 4797.591 kb on + strandat 4797.638 kb on - strandat 4797.673 kb on - strandat 4797.763 kb on + strand, within BT3694

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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4,796,376 + -1.1
4,797,591 + -1.1
4,797,638 - -1.1
4,797,673 - +0.1
4,797,763 + BT3694 0.10 -0.4

Or see this region's nucleotide sequence