Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3692

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3690 and BT3691 overlap by 4 nucleotidesBT3691 and BT3692 are separated by 196 nucleotidesBT3692 and BT3693 are separated by 28 nucleotides BT3690: BT3690 - putative membrane protein (NCBI ptt file), at 4,794,027 to 4,794,722 BT3690 BT3691: BT3691 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 4,794,719 to 4,795,162 BT3691 BT3692: BT3692 - phosphate acetyltransferase (NCBI ptt file), at 4,795,359 to 4,796,378 BT3692 BT3693: BT3693 - acetate kinase (NCBI ptt file), at 4,796,407 to 4,797,606 BT3693 Position (kb) 4795 4796 4797Strain fitness (log2 ratio) -2 -1 0 1at 4794.393 kb on + strand, within BT3690at 4794.394 kb on - strand, within BT3690at 4794.484 kb on + strand, within BT3690at 4794.591 kb on - strand, within BT3690at 4794.591 kb on - strand, within BT3690at 4794.737 kb on + strandat 4794.788 kb on + strand, within BT3691at 4794.812 kb on - strand, within BT3691at 4794.940 kb on - strand, within BT3691at 4794.966 kb on - strand, within BT3691at 4795.104 kb on + strand, within BT3691at 4795.162 kb on + strandat 4795.162 kb on + strandat 4795.163 kb on - strandat 4795.168 kb on - strandat 4795.172 kb on - strandat 4795.175 kb on + strandat 4795.284 kb on + strandat 4796.376 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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4,794,393 + BT3690 0.53 -0.8
4,794,394 - BT3690 0.53 -0.1
4,794,484 + BT3690 0.66 -1.1
4,794,591 - BT3690 0.81 -1.7
4,794,591 - BT3690 0.81 -0.1
4,794,737 + -1.9
4,794,788 + BT3691 0.16 -2.6
4,794,812 - BT3691 0.21 -1.1
4,794,940 - BT3691 0.50 -2.4
4,794,966 - BT3691 0.56 -1.4
4,795,104 + BT3691 0.87 -2.1
4,795,162 + -1.7
4,795,162 + -2.3
4,795,163 - -0.1
4,795,168 - -1.7
4,795,172 - -1.6
4,795,175 + +1.5
4,795,284 + -1.2
4,796,376 + -1.1

Or see this region's nucleotide sequence