Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2933

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2932 and BT2933 are separated by 143 nucleotidesBT2933 and BT2934 are separated by 248 nucleotides BT2932: BT2932 - transcriptional regulator (NCBI ptt file), at 3,687,545 to 3,688,270 BT2932 BT2933: BT2933 - Methionyl-tRNA synthetase (NCBI ptt file), at 3,688,414 to 3,690,453 BT2933 BT2934: BT2934 - putative transmembrane transport protein, putative lipopolysaccharide biosynthesis protein (NCBI ptt file), at 3,690,702 to 3,692,150 BT2934 Position (kb) 3688 3689 3690 3691Strain fitness (log2 ratio) -3 -2 -1 0 1at 3687.524 kb on + strandat 3687.853 kb on - strand, within BT2932at 3688.000 kb on + strand, within BT2932at 3688.001 kb on - strand, within BT2932at 3688.004 kb on + strand, within BT2932at 3688.005 kb on - strand, within BT2932at 3688.028 kb on - strand, within BT2932at 3688.082 kb on + strand, within BT2932at 3688.259 kb on - strandat 3688.284 kb on + strandat 3688.284 kb on + strandat 3688.285 kb on - strandat 3690.062 kb on + strand, within BT2933at 3690.106 kb on + strand, within BT2933at 3690.466 kb on + strandat 3690.563 kb on + strandat 3690.563 kb on + strandat 3690.563 kb on + strandat 3690.563 kb on + strandat 3690.658 kb on + strandat 3690.661 kb on + strandat 3690.698 kb on + strandat 3690.701 kb on + strandat 3690.701 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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3,687,524 + -0.8
3,687,853 - BT2932 0.42 -2.2
3,688,000 + BT2932 0.63 -0.2
3,688,001 - BT2932 0.63 -2.2
3,688,004 + BT2932 0.63 -1.8
3,688,005 - BT2932 0.63 -0.6
3,688,028 - BT2932 0.67 -3.7
3,688,082 + BT2932 0.74 -1.2
3,688,259 - -0.6
3,688,284 + -0.4
3,688,284 + -0.2
3,688,285 - -2.5
3,690,062 + BT2933 0.81 -2.2
3,690,106 + BT2933 0.83 -2.7
3,690,466 + -1.7
3,690,563 + -0.5
3,690,563 + -0.7
3,690,563 + -2.8
3,690,563 + -1.7
3,690,658 + -1.7
3,690,661 + -1.6
3,690,698 + -1.2
3,690,701 + +0.4
3,690,701 + -3.5

Or see this region's nucleotide sequence