Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT2702 and BT2703 are separated by 116 nucleotides BT2703 and BT2704 are separated by 11 nucleotides BT2704 and BT2705 are separated by 159 nucleotides BT2705 and BT2706 are separated by 1 nucleotides
BT2702: BT2702 - 30S ribosomal protein S4 (NCBI ptt file), at 3,365,374 to 3,365,979
BT2702
BT2703: BT2703 - 30S ribosomal protein S11 (NCBI ptt file), at 3,366,096 to 3,366,485
BT2703
BT2704: BT2704 - 30S ribosomal protein S13 (NCBI ptt file), at 3,366,497 to 3,366,877
BT2704
BT2705: BT2705 - translation initiation factor IF-1 (NCBI ptt file), at 3,367,037 to 3,367,255
BT2705
BT2706: BT2706 - methionine aminopeptidase (NCBI ptt file), at 3,367,257 to 3,368,054
BT2706
Position (kb)
3366
3367 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3367.269 kb on - strand at 3367.269 kb on - strand at 3367.269 kb on - strand at 3367.269 kb on - strand at 3367.341 kb on - strand, within BT2706 at 3367.478 kb on - strand, within BT2706 at 3367.497 kb on - strand, within BT2706 at 3367.497 kb on - strand, within BT2706 at 3367.501 kb on - strand, within BT2706 at 3367.593 kb on - strand, within BT2706 at 3367.627 kb on - strand, within BT2706 at 3367.627 kb on - strand, within BT2706 at 3367.647 kb on - strand, within BT2706 at 3367.647 kb on - strand, within BT2706 at 3367.649 kb on - strand, within BT2706 at 3367.649 kb on - strand, within BT2706 at 3367.649 kb on - strand, within BT2706 at 3367.696 kb on - strand, within BT2706 at 3367.768 kb on - strand, within BT2706 at 3367.816 kb on - strand, within BT2706 at 3367.836 kb on - strand, within BT2706
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM remove 3,367,269 - -3.8 3,367,269 - +1.0 3,367,269 - -2.2 3,367,269 - +1.2 3,367,341 - BT2706 0.11 +0.4 3,367,478 - BT2706 0.28 -1.2 3,367,497 - BT2706 0.30 +1.4 3,367,497 - BT2706 0.30 +0.7 3,367,501 - BT2706 0.31 -0.1 3,367,593 - BT2706 0.42 -0.6 3,367,627 - BT2706 0.46 +1.5 3,367,627 - BT2706 0.46 -0.2 3,367,647 - BT2706 0.49 +1.3 3,367,647 - BT2706 0.49 +0.1 3,367,649 - BT2706 0.49 +0.4 3,367,649 - BT2706 0.49 -0.7 3,367,649 - BT2706 0.49 -1.4 3,367,696 - BT2706 0.55 -0.5 3,367,768 - BT2706 0.64 +0.8 3,367,816 - BT2706 0.70 +0.5 3,367,836 - BT2706 0.73 +0.8
Or see this region's nucleotide sequence