Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2704

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2702 and BT2703 are separated by 116 nucleotidesBT2703 and BT2704 are separated by 11 nucleotidesBT2704 and BT2705 are separated by 159 nucleotidesBT2705 and BT2706 are separated by 1 nucleotides BT2702: BT2702 - 30S ribosomal protein S4 (NCBI ptt file), at 3,365,374 to 3,365,979 BT2702 BT2703: BT2703 - 30S ribosomal protein S11 (NCBI ptt file), at 3,366,096 to 3,366,485 BT2703 BT2704: BT2704 - 30S ribosomal protein S13 (NCBI ptt file), at 3,366,497 to 3,366,877 BT2704 BT2705: BT2705 - translation initiation factor IF-1 (NCBI ptt file), at 3,367,037 to 3,367,255 BT2705 BT2706: BT2706 - methionine aminopeptidase (NCBI ptt file), at 3,367,257 to 3,368,054 BT2706 Position (kb) 3366 3367Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.269 kb on - strandat 3367.341 kb on - strand, within BT2706at 3367.478 kb on - strand, within BT2706at 3367.497 kb on - strand, within BT2706at 3367.497 kb on - strand, within BT2706at 3367.501 kb on - strand, within BT2706at 3367.593 kb on - strand, within BT2706at 3367.627 kb on - strand, within BT2706at 3367.627 kb on - strand, within BT2706at 3367.647 kb on - strand, within BT2706at 3367.647 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.649 kb on - strand, within BT2706at 3367.696 kb on - strand, within BT2706at 3367.768 kb on - strand, within BT2706at 3367.816 kb on - strand, within BT2706at 3367.836 kb on - strand, within BT2706

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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3,367,269 - -3.8
3,367,269 - +1.0
3,367,269 - -2.2
3,367,269 - +1.2
3,367,341 - BT2706 0.11 +0.4
3,367,478 - BT2706 0.28 -1.2
3,367,497 - BT2706 0.30 +1.4
3,367,497 - BT2706 0.30 +0.7
3,367,501 - BT2706 0.31 -0.1
3,367,593 - BT2706 0.42 -0.6
3,367,627 - BT2706 0.46 +1.5
3,367,627 - BT2706 0.46 -0.2
3,367,647 - BT2706 0.49 +1.3
3,367,647 - BT2706 0.49 +0.1
3,367,649 - BT2706 0.49 +0.4
3,367,649 - BT2706 0.49 -0.7
3,367,649 - BT2706 0.49 -1.4
3,367,696 - BT2706 0.55 -0.5
3,367,768 - BT2706 0.64 +0.8
3,367,816 - BT2706 0.70 +0.5
3,367,836 - BT2706 0.73 +0.8

Or see this region's nucleotide sequence