Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2674

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2673 and BT2674 are separated by 32 nucleotides BT2673: BT2673 - hypothetical protein (NCBI ptt file), at 3,331,584 to 3,331,946 BT2673 BT2674: BT2674 - transposase (NCBI ptt file), at 3,331,979 to 3,332,872 BT2674 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -3 -2 -1 0 1at 3331.067 kb on + strandat 3331.070 kb on + strandat 3331.070 kb on + strandat 3331.070 kb on + strandat 3331.247 kb on + strandat 3331.248 kb on - strandat 3331.294 kb on + strandat 3331.303 kb on + strandat 3331.328 kb on - strandat 3331.332 kb on - strandat 3331.359 kb on + strandat 3331.497 kb on + strandat 3331.522 kb on + strandat 3331.522 kb on + strandat 3331.523 kb on - strandat 3331.523 kb on - strandat 3331.559 kb on - strandat 3331.563 kb on - strandat 3333.102 kb on + strandat 3333.118 kb on + strandat 3333.118 kb on + strandat 3333.118 kb on + strandat 3333.405 kb on - strandat 3333.408 kb on - strandat 3333.522 kb on + strandat 3333.556 kb on + strandat 3333.600 kb on - strandat 3333.608 kb on - strandat 3333.695 kb on - strandat 3333.718 kb on + strandat 3333.760 kb on + strandat 3333.823 kb on + strandat 3333.839 kb on - strandat 3333.843 kb on - strandat 3333.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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3,331,067 + -0.4
3,331,070 + -0.9
3,331,070 + -2.2
3,331,070 + -0.6
3,331,247 + -1.0
3,331,248 - -3.5
3,331,294 + -3.7
3,331,303 + -2.2
3,331,328 - -0.6
3,331,332 - -1.2
3,331,359 + -0.5
3,331,497 + -1.2
3,331,522 + -0.2
3,331,522 + -1.7
3,331,523 - -1.4
3,331,523 - +0.8
3,331,559 - -2.7
3,331,563 - -2.2
3,333,102 + -0.2
3,333,118 + -0.4
3,333,118 + -1.7
3,333,118 + -0.7
3,333,405 - -1.0
3,333,408 - -0.8
3,333,522 + +1.1
3,333,556 + -3.6
3,333,600 - -3.6
3,333,608 - -0.9
3,333,695 - -1.4
3,333,718 + -2.1
3,333,760 + +1.4
3,333,823 + -1.2
3,333,839 - -1.0
3,333,843 - -0.2
3,333,851 + -1.0

Or see this region's nucleotide sequence