Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2005

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2003 and BT2004 are separated by 12 nucleotidesBT2004 and BT2005 overlap by 4 nucleotidesBT2005 and BT2006 are separated by 129 nucleotidesBT2006 and BT2007 are separated by 121 nucleotides BT2003: BT2003 - putative membrane peptidase (NCBI ptt file), at 2,519,858 to 2,520,715 BT2003 BT2004: BT2004 - RimM protein, required for 16S rRNA processing (NCBI ptt file), at 2,520,728 to 2,521,267 BT2004 BT2005: BT2005 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file), at 2,521,264 to 2,522,568 BT2005 BT2006: BT2006 - hypothetical protein (NCBI ptt file), at 2,522,698 to 2,523,312 BT2006 BT2007: BT2007 - conserved hypothetical protein, putative glycoprotease (NCBI ptt file), at 2,523,434 to 2,524,129 BT2007 Position (kb) 2521 2522 2523Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2520.641 kb on - strandat 2522.594 kb on - strandat 2522.597 kb on - strandat 2522.618 kb on - strandat 2522.681 kb on - strandat 2523.169 kb on - strand, within BT2006at 2523.169 kb on - strand, within BT2006at 2523.169 kb on - strand, within BT2006at 2523.196 kb on - strand, within BT2006at 2523.257 kb on - strandat 2523.306 kb on - strandat 2523.405 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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2,520,641 - -2.8
2,522,594 - -1.1
2,522,597 - -2.8
2,522,618 - -2.0
2,522,681 - -2.3
2,523,169 - BT2006 0.77 -3.8
2,523,169 - BT2006 0.77 -0.0
2,523,169 - BT2006 0.77 -2.8
2,523,196 - BT2006 0.81 -1.0
2,523,257 - +0.8
2,523,306 - -2.6
2,523,405 - -2.6

Or see this region's nucleotide sequence