Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1725

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1723 and BT1724 are separated by 59 nucleotidesBT1724 and BT1725 are separated by 10 nucleotidesBT1725 and BT1726 are separated by 336 nucleotides BT1723: BT1723 - polysialic acid transport protein kpsD precursor (NCBI ptt file), at 2,120,845 to 2,123,214 BT1723 BT1724: BT1724 - conserved hypothetical protein (NCBI ptt file), at 2,123,274 to 2,123,642 BT1724 BT1725: BT1725 - putative transcriptional regulator (NCBI ptt file), at 2,123,653 to 2,124,231 BT1725 BT1726: BT1726 - integrase (NCBI ptt file), at 2,124,568 to 2,125,518 BT1726 Position (kb) 2123 2124 2125Strain fitness (log2 ratio) -3 -2 -1 0 1at 2122.896 kb on + strand, within BT1723at 2122.896 kb on + strand, within BT1723at 2122.896 kb on + strand, within BT1723at 2123.029 kb on - strandat 2123.633 kb on + strandat 2123.695 kb on - strandat 2123.993 kb on - strand, within BT1725at 2124.845 kb on + strand, within BT1726

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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2,122,896 + BT1723 0.87 +0.4
2,122,896 + BT1723 0.87 -1.9
2,122,896 + BT1723 0.87 -2.7
2,123,029 - -0.9
2,123,633 + -3.1
2,123,695 - -0.9
2,123,993 - BT1725 0.59 -1.5
2,124,845 + BT1726 0.29 +1.1

Or see this region's nucleotide sequence