Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1224

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1223 and BT1224 are separated by 76 nucleotidesBT1224 and BT1225 are separated by 103 nucleotides BT1223: BT1223 - Na+/H+-dicarboxylate symporter (NCBI ptt file), at 1,521,638 to 1,522,807 BT1223 BT1224: BT1224 - GDP-mannose 4,6-dehydratase (NCBI ptt file), at 1,522,884 to 1,523,954 BT1224 BT1225: BT1225 - GDP-fucose synthetase (NCBI ptt file), at 1,524,058 to 1,525,128 BT1225 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -2 -1 0 1at 1522.172 kb on + strand, within BT1223at 1522.215 kb on + strand, within BT1223at 1522.215 kb on + strand, within BT1223at 1522.827 kb on + strandat 1522.929 kb on + strandat 1524.005 kb on + strandat 1524.042 kb on + strandat 1524.044 kb on + strandat 1524.045 kb on - strandat 1524.053 kb on + strandat 1524.845 kb on + strand, within BT1225at 1524.875 kb on - strand, within BT1225

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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1,522,172 + BT1223 0.46 -2.6
1,522,215 + BT1223 0.49 -2.6
1,522,215 + BT1223 0.49 +0.2
1,522,827 + -1.4
1,522,929 + -1.4
1,524,005 + +0.8
1,524,042 + +0.2
1,524,044 + +1.2
1,524,045 - -1.1
1,524,053 + +0.2
1,524,845 + BT1225 0.73 -2.6
1,524,875 - BT1225 0.76 -2.1

Or see this region's nucleotide sequence