Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0895

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0894 and BT0895 are separated by 59 nucleotidesBT0895 and tRNA-Arg are separated by 540 nucleotidestRNA-Arg and tRNA-Arg are separated by 20 nucleotidestRNA-Arg and tRNA-Arg are separated by 20 nucleotidestRNA-Arg and BT0896 are separated by 79 nucleotides BT0894: BT0894 - DNA ligase (NCBI ptt file), at 1,096,350 to 1,098,350 BT0894 BT0895: BT0895 - dihydrodipicolinate synthase (NCBI ptt file), at 1,098,410 to 1,099,303 BT0895 BT_t14: tRNA-Arg - tRNA-Arg (RefSeq), at 1,099,844 to 1,099,920 tRNA-Arg BT_t15: tRNA-Arg - tRNA-Arg (RefSeq), at 1,099,941 to 1,100,014 tRNA-Arg BT_t16: tRNA-Arg - tRNA-Arg (RefSeq), at 1,100,035 to 1,100,108 tRNA-Arg BT0896: BT0896 - putative patatin-like phospholipase (NCBI ptt file), at 1,100,188 to 1,102,446 BT0896 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -2 -1 0 1at 1099.270 kb on + strandat 1099.320 kb on - strandat 1099.372 kb on - strandat 1099.479 kb on + strandat 1099.483 kb on - strandat 1099.499 kb on + strandat 1099.500 kb on - strandat 1099.508 kb on - strandat 1099.662 kb on + strandat 1099.669 kb on + strandat 1099.669 kb on + strandat 1099.669 kb on + strandat 1099.705 kb on + strandat 1099.926 kb on - strandat 1099.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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1,099,270 + -0.9
1,099,320 - -1.2
1,099,372 - -2.2
1,099,479 + -1.9
1,099,483 - -0.6
1,099,499 + -1.2
1,099,500 - -0.9
1,099,508 - -0.9
1,099,662 + -2.4
1,099,669 + +0.1
1,099,669 + +0.1
1,099,669 + -1.9
1,099,705 + -1.4
1,099,926 - +0.1
1,099,936 - -2.4

Or see this region's nucleotide sequence