Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0624

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0623 and BT0624 are separated by 232 nucleotidesBT0624 and BT0625 are separated by 198 nucleotides BT0623: BT0623 - putative UDP-glucose 4-epimerase (NCBI ptt file), at 767,597 to 768,631 BT0623 BT0624: BT0624 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (NCBI ptt file), at 768,864 to 769,688 BT0624 BT0625: BT0625 - DNA helicase (NCBI ptt file), at 769,887 to 771,440 BT0625 Position (kb) 768 769 770Strain fitness (log2 ratio) -2 -1 0 1at 768.692 kb on + strandat 768.737 kb on + strandat 768.748 kb on + strandat 768.748 kb on + strandat 768.866 kb on - strandat 769.703 kb on - strandat 769.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
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768,692 + -0.9
768,737 + -1.9
768,748 + +1.1
768,748 + -0.9
768,866 - -2.0
769,703 - -0.9
769,832 + +1.7

Or see this region's nucleotide sequence