Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0368

Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT0367 and BT0368 are separated by 25 nucleotidesBT0368 and BT0369 are separated by 1 nucleotides BT0367: BT0367 - putative endo-arabinase (NCBI ptt file), at 450,805 to 452,346 BT0367 BT0368: BT0368 - alpha-L-arabinofuranosidase A precursor (NCBI ptt file), at 452,372 to 454,354 BT0368 BT0369: BT0369 - endo-1,4-beta-xylanase D precursor (NCBI ptt file), at 454,356 to 455,321 BT0369 Position (kb) 452 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1at 451.380 kb on + strand, within BT0367at 451.432 kb on - strand, within BT0367at 451.553 kb on - strand, within BT0367at 451.553 kb on - strand, within BT0367at 451.583 kb on + strand, within BT0367at 451.613 kb on - strand, within BT0367at 451.649 kb on - strand, within BT0367at 451.650 kb on + strand, within BT0367at 451.881 kb on - strand, within BT0367at 451.884 kb on + strand, within BT0367at 451.887 kb on - strand, within BT0367at 451.940 kb on - strand, within BT0367at 452.020 kb on + strand, within BT0367at 452.158 kb on - strand, within BT0367at 452.354 kb on + strandat 452.409 kb on + strandat 452.495 kb on + strandat 452.658 kb on - strand, within BT0368at 452.789 kb on - strand, within BT0368at 452.789 kb on - strand, within BT0368at 453.192 kb on - strand, within BT0368at 453.200 kb on - strand, within BT0368at 453.483 kb on - strand, within BT0368at 453.623 kb on + strand, within BT0368at 453.624 kb on - strand, within BT0368at 453.721 kb on + strand, within BT0368at 453.722 kb on - strand, within BT0368at 453.722 kb on - strand, within BT0368at 453.722 kb on - strand, within BT0368at 453.725 kb on + strand, within BT0368at 453.858 kb on + strand, within BT0368at 453.858 kb on + strand, within BT0368at 453.858 kb on + strand, within BT0368at 453.858 kb on + strand, within BT0368at 453.862 kb on + strand, within BT0368at 453.862 kb on + strand, within BT0368at 453.863 kb on - strand, within BT0368at 453.958 kb on - strand, within BT0368at 453.962 kb on + strand, within BT0368at 453.965 kb on + strand, within BT0368at 453.966 kb on - strand, within BT0368at 454.079 kb on + strand, within BT0368at 454.118 kb on - strand, within BT0368at 454.121 kb on - strand, within BT0368at 454.144 kb on - strand, within BT0368at 454.235 kb on - strandat 454.337 kb on - strandat 454.512 kb on + strand, within BT0369at 454.512 kb on + strand, within BT0369at 454.513 kb on - strand, within BT0369at 454.579 kb on + strand, within BT0369at 454.702 kb on - strand, within BT0369at 454.707 kb on + strand, within BT0369at 454.754 kb on - strand, within BT0369at 454.896 kb on + strand, within BT0369at 454.903 kb on - strand, within BT0369at 454.914 kb on + strand, within BT0369at 454.923 kb on + strand, within BT0369at 455.015 kb on + strand, within BT0369at 455.016 kb on - strand, within BT0369at 455.016 kb on - strandat 455.016 kb on - strand, within BT0369at 455.016 kb on - strand, within BT0369at 455.016 kb on - strand, within BT0369at 455.043 kb on + strand, within BT0369at 455.043 kb on + strand, within BT0369at 455.068 kb on + strand, within BT0369at 455.088 kb on - strand, within BT0369at 455.188 kb on - strand, within BT0369at 455.262 kb on + strandat 455.263 kb on - strandat 455.266 kb on - strandat 455.331 kb on + strandat 455.339 kb on + strandat 455.348 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
remove
451,380 + BT0367 0.37 -1.0
451,432 - BT0367 0.41 -1.5
451,553 - BT0367 0.49 -2.0
451,553 - BT0367 0.49 +0.0
451,583 + BT0367 0.50 -1.0
451,613 - BT0367 0.52 -2.3
451,649 - BT0367 0.55 -1.5
451,650 + BT0367 0.55 +0.0
451,881 - BT0367 0.70 -0.6
451,884 + BT0367 0.70 -2.3
451,887 - BT0367 0.70 -1.3
451,940 - BT0367 0.74 -1.0
452,020 + BT0367 0.79 +0.0
452,158 - BT0367 0.88 -2.3
452,354 + +0.0
452,409 + +0.7
452,495 + -0.7
452,658 - BT0368 0.14 -2.3
452,789 - BT0368 0.21 -2.8
452,789 - BT0368 0.21 -1.5
453,192 - BT0368 0.41 -1.8
453,200 - BT0368 0.42 -2.0
453,483 - BT0368 0.56 -2.0
453,623 + BT0368 0.63 -2.5
453,624 - BT0368 0.63 +0.0
453,721 + BT0368 0.68 +0.0
453,722 - BT0368 0.68 -1.6
453,722 - BT0368 0.68 -1.5
453,722 - BT0368 0.68 -3.1
453,725 + BT0368 0.68 -1.0
453,858 + BT0368 0.75 -2.3
453,858 + BT0368 0.75 -1.5
453,858 + BT0368 0.75 -2.3
453,858 + BT0368 0.75 +0.0
453,862 + BT0368 0.75 -1.0
453,862 + BT0368 0.75 -2.3
453,863 - BT0368 0.75 -0.8
453,958 - BT0368 0.80 -1.7
453,962 + BT0368 0.80 -1.0
453,965 + BT0368 0.80 -1.0
453,966 - BT0368 0.80 -1.0
454,079 + BT0368 0.86 -2.0
454,118 - BT0368 0.88 +0.1
454,121 - BT0368 0.88 -1.5
454,144 - BT0368 0.89 -2.5
454,235 - +1.6
454,337 - -0.4
454,512 + BT0369 0.16 -2.3
454,512 + BT0369 0.16 +0.1
454,513 - BT0369 0.16 +1.6
454,579 + BT0369 0.23 -1.9
454,702 - BT0369 0.36 -1.9
454,707 + BT0369 0.36 -1.2
454,754 - BT0369 0.41 -0.9
454,896 + BT0369 0.56 +0.1
454,903 - BT0369 0.57 -2.6
454,914 + BT0369 0.58 +0.1
454,923 + BT0369 0.59 +0.1
455,015 + BT0369 0.68 -0.9
455,016 - BT0369 0.68 -1.5
455,016 - -1.5
455,016 - BT0369 0.68 +1.1
455,016 - BT0369 0.68 -1.5
455,016 - BT0369 0.68 +0.3
455,043 + BT0369 0.71 +1.1
455,043 + BT0369 0.71 -0.2
455,068 + BT0369 0.74 -1.2
455,088 - BT0369 0.76 -1.8
455,188 - BT0369 0.86 -0.9
455,262 + +0.1
455,263 - -0.9
455,266 - +1.6
455,331 + -0.9
455,339 + -0.8
455,348 + -0.9

Or see this region's nucleotide sequence