Experiment: Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0344 and BT0345 are separated by 52 nucleotides BT0345 and BT0346 are separated by 189 nucleotides BT0346 and BT0347 overlap by 1 nucleotides
BT0344: BT0344 - hypothetical protein (NCBI ptt file), at 413,304 to 414,149
BT0344
BT0345: BT0345 - hypothetical protein (NCBI ptt file), at 414,202 to 414,912
BT0345
BT0346: BT0346 - ribose 5-phosphate isomerase B (NCBI ptt file), at 415,102 to 415,536
BT0346
BT0347: BT0347 - transketolase (NCBI ptt file), at 415,536 to 417,545
BT0347
Position (kb) 415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.103 kb on + strand at 414.108 kb on - strand at 414.198 kb on + strand at 414.199 kb on - strand at 414.225 kb on - strand at 414.322 kb on + strand, within BT0345 at 414.354 kb on + strand, within BT0345 at 414.389 kb on - strand, within BT0345 at 414.459 kb on + strand, within BT0345 at 414.493 kb on - strand, within BT0345 at 414.502 kb on - strand, within BT0345 at 414.556 kb on + strand, within BT0345 at 414.559 kb on + strand, within BT0345 at 414.559 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.615 kb on + strand, within BT0345 at 414.616 kb on - strand, within BT0345 at 414.645 kb on + strand, within BT0345 at 414.658 kb on - strand, within BT0345 at 414.668 kb on + strand, within BT0345 at 414.690 kb on + strand, within BT0345 at 414.690 kb on + strand, within BT0345 at 414.822 kb on - strand, within BT0345 at 414.837 kb on - strand, within BT0345 at 414.892 kb on + strand at 414.892 kb on + strand at 414.895 kb on + strand at 414.917 kb on - strand at 414.922 kb on + strand at 414.929 kb on - strand at 414.929 kb on - strand at 414.929 kb on - strand at 414.932 kb on + strand at 414.932 kb on + strand at 414.933 kb on - strand at 414.933 kb on - strand at 414.958 kb on - strand at 414.960 kb on - strand at 414.962 kb on + strand at 414.973 kb on - strand at 415.020 kb on + strand at 415.020 kb on + strand at 415.023 kb on - strand at 415.063 kb on + strand at 415.560 kb on - strand at 415.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM remove 414,103 + -1.5 414,108 - -2.0 414,198 + -2.8 414,199 - -1.3 414,225 - +0.6 414,322 + BT0345 0.17 -1.2 414,354 + BT0345 0.21 -0.8 414,389 - BT0345 0.26 -1.0 414,459 + BT0345 0.36 -1.5 414,493 - BT0345 0.41 -1.0 414,502 - BT0345 0.42 +0.0 414,556 + BT0345 0.50 -0.3 414,559 + BT0345 0.50 -1.0 414,559 + BT0345 0.50 -0.5 414,615 + BT0345 0.58 -3.5 414,615 + BT0345 0.58 -2.8 414,615 + BT0345 0.58 -1.1 414,616 - BT0345 0.58 -2.4 414,645 + BT0345 0.62 +0.0 414,658 - BT0345 0.64 -0.5 414,668 + BT0345 0.66 -1.0 414,690 + BT0345 0.69 -1.0 414,690 + BT0345 0.69 +0.0 414,822 - BT0345 0.87 +0.0 414,837 - BT0345 0.89 +0.0 414,892 + -1.0 414,892 + -1.4 414,895 + -0.4 414,917 - -1.0 414,922 + -0.6 414,929 - +0.0 414,929 - -3.4 414,929 - -3.1 414,932 + -2.0 414,932 + -2.3 414,933 - -1.5 414,933 - +0.0 414,958 - +1.0 414,960 - +0.0 414,962 + +1.0 414,973 - +0.0 415,020 + +0.0 415,020 + +0.0 415,023 - +0.0 415,063 + -1.8 415,560 - +2.0 415,564 - -1.0
Or see this region's nucleotide sequence