Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0865

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0864 and Psest_0865 are separated by 11 nucleotidesPsest_0865 and Psest_0866 are separated by 39 nucleotides Psest_0864: Psest_0864 - maltose ABC transporter, permease component 1 (MalF) (from data), at 938,104 to 939,669 _0864 Psest_0865: Psest_0865 - maltose ABC transporter, permease component 2 (MalG) (from data), at 939,681 to 940,571 _0865 Psest_0866: Psest_0866 - ATP-dependent transcriptional regulator, at 940,611 to 943,421 _0866 Position (kb) 939 940 941Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.857 kb on + strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 938.858 kb on - strand, within Psest_0864at 939.103 kb on + strand, within Psest_0864at 939.277 kb on + strand, within Psest_0864at 939.277 kb on + strand, within Psest_0864at 939.278 kb on - strand, within Psest_0864at 939.278 kb on - strand, within Psest_0864at 939.456 kb on - strand, within Psest_0864at 939.538 kb on + strandat 939.538 kb on + strandat 939.538 kb on + strandat 939.538 kb on + strandat 939.539 kb on - strandat 939.539 kb on - strandat 939.539 kb on - strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.665 kb on + strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.666 kb on - strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.667 kb on + strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 939.668 kb on - strandat 940.016 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.101 kb on + strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.102 kb on - strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.199 kb on + strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.200 kb on - strand, within Psest_0865at 940.218 kb on + strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.219 kb on - strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.434 kb on + strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.435 kb on - strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.452 kb on + strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.453 kb on - strand, within Psest_0865at 940.577 kb on + strandat 940.577 kb on + strandat 940.795 kb on + strandat 940.795 kb on + strandat 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866at 941.454 kb on + strand, within Psest_0866

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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938,857 + Psest_0864 0.48 -4.0
938,857 + Psest_0864 0.48 -1.2
938,857 + Psest_0864 0.48 -1.2
938,857 + Psest_0864 0.48 -1.7
938,857 + Psest_0864 0.48 -4.2
938,857 + Psest_0864 0.48 -4.2
938,857 + Psest_0864 0.48 -5.3
938,858 - Psest_0864 0.48 -3.2
938,858 - Psest_0864 0.48 -2.3
938,858 - Psest_0864 0.48 -3.6
938,858 - Psest_0864 0.48 -6.9
938,858 - Psest_0864 0.48 -2.5
939,103 + Psest_0864 0.64 -1.8
939,277 + Psest_0864 0.75 -2.2
939,277 + Psest_0864 0.75 -3.5
939,278 - Psest_0864 0.75 -4.5
939,278 - Psest_0864 0.75 -4.9
939,456 - Psest_0864 0.86 -2.9
939,538 + -3.8
939,538 + -2.9
939,538 + -4.2
939,538 + -3.9
939,539 - -3.1
939,539 - -1.9
939,539 - -5.3
939,665 + -1.9
939,665 + -4.6
939,665 + -2.8
939,665 + -2.8
939,665 + -2.6
939,665 + -2.2
939,665 + -2.5
939,665 + -3.5
939,665 + -1.9
939,666 - -4.7
939,666 - -3.1
939,666 - -4.4
939,666 - -2.6
939,666 - -4.3
939,666 - -5.4
939,666 - -3.7
939,666 - -0.8
939,667 + -3.6
939,667 + -3.2
939,667 + -4.0
939,667 + -5.1
939,668 - -2.3
939,668 - -3.6
939,668 - -1.5
939,668 - -3.4
940,016 + Psest_0865 0.38 -3.2
940,101 + Psest_0865 0.47 -3.2
940,101 + Psest_0865 0.47 -3.1
940,101 + Psest_0865 0.47 -0.6
940,101 + Psest_0865 0.47 -3.3
940,101 + Psest_0865 0.47 -2.9
940,101 + Psest_0865 0.47 -5.5
940,101 + Psest_0865 0.47 -3.0
940,101 + Psest_0865 0.47 -4.5
940,102 - Psest_0865 0.47 -3.0
940,102 - Psest_0865 0.47 -1.6
940,102 - Psest_0865 0.47 -3.7
940,102 - Psest_0865 0.47 +0.4
940,102 - Psest_0865 0.47 -1.7
940,102 - Psest_0865 0.47 -3.4
940,102 - Psest_0865 0.47 -4.8
940,102 - Psest_0865 0.47 -3.6
940,102 - Psest_0865 0.47 -3.1
940,199 + Psest_0865 0.58 -4.1
940,199 + Psest_0865 0.58 -4.8
940,199 + Psest_0865 0.58 -2.3
940,200 - Psest_0865 0.58 -5.3
940,200 - Psest_0865 0.58 -0.4
940,200 - Psest_0865 0.58 -6.7
940,200 - Psest_0865 0.58 -1.9
940,200 - Psest_0865 0.58 -3.7
940,218 + Psest_0865 0.60 -1.8
940,219 - Psest_0865 0.60 -3.2
940,219 - Psest_0865 0.60 -1.9
940,434 + Psest_0865 0.85 -5.4
940,434 + Psest_0865 0.85 -3.6
940,434 + Psest_0865 0.85 -4.3
940,434 + Psest_0865 0.85 -3.8
940,434 + Psest_0865 0.85 -1.5
940,434 + Psest_0865 0.85 -2.4
940,434 + Psest_0865 0.85 -3.3
940,434 + Psest_0865 0.85 -2.5
940,434 + Psest_0865 0.85 -2.4
940,435 - Psest_0865 0.85 -1.6
940,435 - Psest_0865 0.85 -3.4
940,435 - Psest_0865 0.85 -3.7
940,435 - Psest_0865 0.85 -2.9
940,435 - Psest_0865 0.85 -0.9
940,452 + Psest_0865 0.87 -2.6
940,452 + Psest_0865 0.87 -4.5
940,452 + Psest_0865 0.87 -3.6
940,453 - Psest_0865 0.87 -2.6
940,453 - Psest_0865 0.87 -4.2
940,577 + -0.1
940,577 + +0.4
940,795 + -5.3
940,795 + -3.0
941,454 + Psest_0866 0.30 -1.5
941,454 + Psest_0866 0.30 -4.0
941,454 + Psest_0866 0.30 -5.5
941,454 + Psest_0866 0.30 -3.9

Or see this region's nucleotide sequence