Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3957

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3956 and Psest_3957 are separated by 180 nucleotidesPsest_3957 and Psest_3958 are separated by 168 nucleotidesPsest_3958 and Psest_3959 are separated by 183 nucleotides Psest_3956: Psest_3956 - Fructose-1,6-bisphosphatase, at 4,121,911 to 4,122,921 _3956 Psest_3957: Psest_3957 - glycogen/starch/alpha-glucan phosphorylases, at 4,123,102 to 4,125,552 _3957 Psest_3958: Psest_3958 - Predicted Fe-S-cluster oxidoreductase, at 4,125,721 to 4,126,158 _3958 Psest_3959: Psest_3959 - thioesterase domain, putative, at 4,126,342 to 4,126,794 _3959 Position (kb) 4123 4124 4125 4126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4122.945 kb on - strandat 4122.970 kb on - strandat 4122.978 kb on + strandat 4122.978 kb on + strandat 4122.978 kb on + strandat 4122.979 kb on - strandat 4122.979 kb on - strandat 4122.979 kb on - strandat 4123.251 kb on - strandat 4123.314 kb on + strandat 4123.412 kb on + strand, within Psest_3957at 4123.412 kb on + strand, within Psest_3957at 4123.412 kb on + strand, within Psest_3957at 4123.413 kb on - strand, within Psest_3957at 4123.413 kb on - strand, within Psest_3957at 4123.557 kb on + strand, within Psest_3957at 4123.558 kb on - strand, within Psest_3957at 4123.594 kb on + strand, within Psest_3957at 4123.606 kb on + strand, within Psest_3957at 4123.606 kb on + strand, within Psest_3957at 4123.607 kb on - strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.649 kb on + strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.650 kb on - strand, within Psest_3957at 4123.708 kb on - strand, within Psest_3957at 4123.708 kb on - strand, within Psest_3957at 4123.708 kb on - strand, within Psest_3957at 4123.755 kb on - strand, within Psest_3957at 4123.755 kb on - strand, within Psest_3957at 4123.832 kb on + strand, within Psest_3957at 4123.874 kb on + strand, within Psest_3957at 4123.874 kb on + strand, within Psest_3957at 4123.875 kb on - strand, within Psest_3957at 4123.875 kb on - strand, within Psest_3957at 4123.875 kb on - strand, within Psest_3957at 4124.117 kb on + strand, within Psest_3957at 4124.118 kb on - strand, within Psest_3957at 4124.194 kb on + strand, within Psest_3957at 4124.195 kb on - strand, within Psest_3957at 4124.195 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.385 kb on - strand, within Psest_3957at 4124.474 kb on + strand, within Psest_3957at 4124.475 kb on - strand, within Psest_3957at 4124.475 kb on - strand, within Psest_3957at 4124.475 kb on - strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.519 kb on + strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.520 kb on - strand, within Psest_3957at 4124.681 kb on + strand, within Psest_3957at 4124.681 kb on + strand, within Psest_3957at 4124.681 kb on + strand, within Psest_3957at 4124.681 kb on + strand, within Psest_3957at 4124.681 kb on + strand, within Psest_3957at 4124.682 kb on - strand, within Psest_3957at 4124.682 kb on - strand, within Psest_3957at 4124.682 kb on - strand, within Psest_3957at 4124.682 kb on - strand, within Psest_3957at 4124.895 kb on - strand, within Psest_3957at 4124.993 kb on + strand, within Psest_3957at 4124.994 kb on - strand, within Psest_3957at 4125.335 kb on + strandat 4125.335 kb on + strandat 4125.335 kb on + strandat 4125.336 kb on - strandat 4125.338 kb on + strandat 4125.338 kb on + strandat 4125.339 kb on - strandat 4125.339 kb on - strandat 4125.339 kb on - strandat 4125.362 kb on + strandat 4125.362 kb on + strandat 4125.362 kb on + strandat 4125.362 kb on + strandat 4125.362 kb on + strandat 4125.363 kb on - strandat 4125.363 kb on - strandat 4125.363 kb on - strandat 4125.363 kb on - strandat 4125.476 kb on + strandat 4125.476 kb on + strandat 4125.477 kb on - strandat 4125.653 kb on + strandat 4125.653 kb on + strandat 4125.653 kb on + strandat 4125.654 kb on - strandat 4125.654 kb on - strandat 4125.654 kb on - strandat 4125.815 kb on - strand, within Psest_3958at 4126.036 kb on + strand, within Psest_3958at 4126.037 kb on - strand, within Psest_3958at 4126.037 kb on - strand, within Psest_3958at 4126.069 kb on + strand, within Psest_3958at 4126.069 kb on + strand, within Psest_3958at 4126.070 kb on - strand, within Psest_3958at 4126.070 kb on - strand, within Psest_3958at 4126.239 kb on + strandat 4126.311 kb on + strandat 4126.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,122,945 - -0.5
4,122,970 - +0.2
4,122,978 + +0.1
4,122,978 + -1.7
4,122,978 + -0.4
4,122,979 - +0.9
4,122,979 - -0.1
4,122,979 - +0.9
4,123,251 - +2.1
4,123,314 + -1.7
4,123,412 + Psest_3957 0.13 +1.1
4,123,412 + Psest_3957 0.13 -0.2
4,123,412 + Psest_3957 0.13 -0.2
4,123,413 - Psest_3957 0.13 +1.1
4,123,413 - Psest_3957 0.13 -1.3
4,123,557 + Psest_3957 0.19 +0.2
4,123,558 - Psest_3957 0.19 +1.2
4,123,594 + Psest_3957 0.20 +1.4
4,123,606 + Psest_3957 0.21 -0.3
4,123,606 + Psest_3957 0.21 +1.2
4,123,607 - Psest_3957 0.21 -2.5
4,123,649 + Psest_3957 0.22 -1.0
4,123,649 + Psest_3957 0.22 -0.5
4,123,649 + Psest_3957 0.22 -0.1
4,123,649 + Psest_3957 0.22 +0.2
4,123,649 + Psest_3957 0.22 +0.1
4,123,649 + Psest_3957 0.22 -2.7
4,123,649 + Psest_3957 0.22 +0.0
4,123,650 - Psest_3957 0.22 -0.4
4,123,650 - Psest_3957 0.22 -0.8
4,123,650 - Psest_3957 0.22 -0.5
4,123,650 - Psest_3957 0.22 -1.1
4,123,650 - Psest_3957 0.22 -2.3
4,123,650 - Psest_3957 0.22 +0.6
4,123,650 - Psest_3957 0.22 +0.5
4,123,650 - Psest_3957 0.22 -0.3
4,123,650 - Psest_3957 0.22 -0.6
4,123,650 - Psest_3957 0.22 -1.2
4,123,650 - Psest_3957 0.22 -0.7
4,123,650 - Psest_3957 0.22 +0.9
4,123,650 - Psest_3957 0.22 +0.3
4,123,650 - Psest_3957 0.22 +0.2
4,123,650 - Psest_3957 0.22 -0.3
4,123,708 - Psest_3957 0.25 -0.5
4,123,708 - Psest_3957 0.25 -0.2
4,123,708 - Psest_3957 0.25 -3.0
4,123,755 - Psest_3957 0.27 +0.3
4,123,755 - Psest_3957 0.27 -1.0
4,123,832 + Psest_3957 0.30 +0.1
4,123,874 + Psest_3957 0.31 -0.8
4,123,874 + Psest_3957 0.31 -0.6
4,123,875 - Psest_3957 0.32 -2.1
4,123,875 - Psest_3957 0.32 +0.2
4,123,875 - Psest_3957 0.32 -0.3
4,124,117 + Psest_3957 0.41 -1.3
4,124,118 - Psest_3957 0.41 +0.7
4,124,194 + Psest_3957 0.45 -0.8
4,124,195 - Psest_3957 0.45 +0.2
4,124,195 - Psest_3957 0.45 -0.3
4,124,385 - Psest_3957 0.52 -1.8
4,124,385 - Psest_3957 0.52 +0.4
4,124,385 - Psest_3957 0.52 -0.1
4,124,385 - Psest_3957 0.52 +0.5
4,124,385 - Psest_3957 0.52 +0.6
4,124,385 - Psest_3957 0.52 +0.1
4,124,474 + Psest_3957 0.56 -0.0
4,124,475 - Psest_3957 0.56 -2.1
4,124,475 - Psest_3957 0.56 +0.9
4,124,475 - Psest_3957 0.56 -0.0
4,124,519 + Psest_3957 0.58 +0.4
4,124,519 + Psest_3957 0.58 +0.5
4,124,519 + Psest_3957 0.58 +0.3
4,124,519 + Psest_3957 0.58 -1.5
4,124,519 + Psest_3957 0.58 +1.6
4,124,519 + Psest_3957 0.58 -1.3
4,124,519 + Psest_3957 0.58 +0.8
4,124,520 - Psest_3957 0.58 -1.3
4,124,520 - Psest_3957 0.58 -0.6
4,124,520 - Psest_3957 0.58 -2.4
4,124,520 - Psest_3957 0.58 -0.1
4,124,520 - Psest_3957 0.58 +0.6
4,124,520 - Psest_3957 0.58 +0.1
4,124,520 - Psest_3957 0.58 -1.2
4,124,520 - Psest_3957 0.58 -0.9
4,124,520 - Psest_3957 0.58 +0.4
4,124,520 - Psest_3957 0.58 +0.3
4,124,681 + Psest_3957 0.64 -0.2
4,124,681 + Psest_3957 0.64 +0.9
4,124,681 + Psest_3957 0.64 -0.7
4,124,681 + Psest_3957 0.64 -1.3
4,124,681 + Psest_3957 0.64 +1.0
4,124,682 - Psest_3957 0.64 -0.6
4,124,682 - Psest_3957 0.64 -1.1
4,124,682 - Psest_3957 0.64 -0.2
4,124,682 - Psest_3957 0.64 +0.9
4,124,895 - Psest_3957 0.73 +0.4
4,124,993 + Psest_3957 0.77 +0.1
4,124,994 - Psest_3957 0.77 +0.3
4,125,335 + -0.6
4,125,335 + +0.2
4,125,335 + +0.4
4,125,336 - +0.3
4,125,338 + -0.5
4,125,338 + -0.1
4,125,339 - -0.0
4,125,339 - +0.1
4,125,339 - -0.3
4,125,362 + -0.4
4,125,362 + +0.1
4,125,362 + +0.3
4,125,362 + +0.6
4,125,362 + +0.6
4,125,363 - +0.0
4,125,363 - -0.9
4,125,363 - +0.4
4,125,363 - -0.0
4,125,476 + -1.5
4,125,476 + -1.3
4,125,477 - +0.2
4,125,653 + -0.4
4,125,653 + -0.1
4,125,653 + +0.7
4,125,654 - -0.4
4,125,654 - -3.0
4,125,654 - +1.1
4,125,815 - Psest_3958 0.21 -0.5
4,126,036 + Psest_3958 0.72 -2.1
4,126,037 - Psest_3958 0.72 -1.5
4,126,037 - Psest_3958 0.72 -0.7
4,126,069 + Psest_3958 0.79 -0.3
4,126,069 + Psest_3958 0.79 +0.5
4,126,070 - Psest_3958 0.80 +0.5
4,126,070 - Psest_3958 0.80 -0.1
4,126,239 + -0.3
4,126,311 + +0.5
4,126,326 + +1.5

Or see this region's nucleotide sequence