Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3009

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3008 and Psest_3009 overlap by 4 nucleotidesPsest_3009 and Psest_3010 overlap by 8 nucleotidesPsest_3010 and Psest_3011 overlap by 4 nucleotides Psest_3008: Psest_3008 - cobyric acid synthase CobQ, at 3,196,118 to 3,197,575 _3008 Psest_3009: Psest_3009 - L-threonine-O-3-phosphate decarboxylase, at 3,197,572 to 3,198,561 _3009 Psest_3010: Psest_3010 - cobalamin biosynthesis protein CobD, at 3,198,554 to 3,199,465 _3010 Psest_3011: Psest_3011 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 3,199,462 to 3,200,262 _3011 Position (kb) 3197 3198 3199Strain fitness (log2 ratio) -1 0 1 2at 3196.754 kb on + strand, within Psest_3008at 3196.754 kb on + strand, within Psest_3008at 3196.755 kb on - strand, within Psest_3008at 3197.260 kb on - strand, within Psest_3008at 3197.260 kb on - strand, within Psest_3008at 3198.276 kb on - strand, within Psest_3009at 3198.467 kb on + strandat 3198.518 kb on + strandat 3198.561 kb on + strandat 3198.561 kb on + strandat 3198.562 kb on - strandat 3198.562 kb on - strandat 3198.562 kb on - strandat 3198.700 kb on - strand, within Psest_3010at 3198.700 kb on - strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.837 kb on + strand, within Psest_3010at 3198.838 kb on - strand, within Psest_3010at 3198.867 kb on + strand, within Psest_3010at 3198.867 kb on + strand, within Psest_3010at 3198.868 kb on - strand, within Psest_3010at 3198.953 kb on - strand, within Psest_3010at 3198.997 kb on + strand, within Psest_3010at 3199.115 kb on + strand, within Psest_3010at 3199.116 kb on - strand, within Psest_3010at 3199.116 kb on - strand, within Psest_3010at 3199.209 kb on + strand, within Psest_3010at 3199.257 kb on - strand, within Psest_3010at 3199.510 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,196,754 + Psest_3008 0.44 +0.6
3,196,754 + Psest_3008 0.44 +0.2
3,196,755 - Psest_3008 0.44 -0.6
3,197,260 - Psest_3008 0.78 +0.8
3,197,260 - Psest_3008 0.78 +1.2
3,198,276 - Psest_3009 0.71 +0.8
3,198,467 + -0.6
3,198,518 + +1.6
3,198,561 + +0.9
3,198,561 + +0.6
3,198,562 - +1.0
3,198,562 - +0.2
3,198,562 - -1.0
3,198,700 - Psest_3010 0.16 -0.6
3,198,700 - Psest_3010 0.16 +1.9
3,198,837 + Psest_3010 0.31 -0.5
3,198,837 + Psest_3010 0.31 +0.4
3,198,837 + Psest_3010 0.31 -0.6
3,198,837 + Psest_3010 0.31 -0.1
3,198,837 + Psest_3010 0.31 -0.8
3,198,837 + Psest_3010 0.31 -0.6
3,198,837 + Psest_3010 0.31 +0.2
3,198,837 + Psest_3010 0.31 -0.1
3,198,837 + Psest_3010 0.31 +0.2
3,198,837 + Psest_3010 0.31 -0.1
3,198,837 + Psest_3010 0.31 -1.0
3,198,837 + Psest_3010 0.31 -0.5
3,198,837 + Psest_3010 0.31 +1.9
3,198,838 - Psest_3010 0.31 -0.8
3,198,867 + Psest_3010 0.34 -0.3
3,198,867 + Psest_3010 0.34 +0.7
3,198,868 - Psest_3010 0.34 -0.2
3,198,953 - Psest_3010 0.44 +0.3
3,198,997 + Psest_3010 0.49 +0.2
3,199,115 + Psest_3010 0.62 -0.4
3,199,116 - Psest_3010 0.62 -0.4
3,199,116 - Psest_3010 0.62 +0.3
3,199,209 + Psest_3010 0.72 +0.1
3,199,257 - Psest_3010 0.77 -1.0
3,199,510 + -0.6

Or see this region's nucleotide sequence