Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2475

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2474 and Psest_2475 are separated by 174 nucleotidesPsest_2475 and Psest_2476 are separated by 24 nucleotides Psest_2474: Psest_2474 - AraC-type DNA-binding domain-containing proteins, at 2,643,741 to 2,644,784 _2474 Psest_2475: Psest_2475 - Acyl-CoA dehydrogenases, at 2,644,959 to 2,646,137 _2475 Psest_2476: Psest_2476 - acetyl-CoA acetyltransferases, at 2,646,162 to 2,647,358 _2476 Position (kb) 2644 2645 2646 2647Strain fitness (log2 ratio) -2 -1 0 1 2at 2644.024 kb on + strand, within Psest_2474at 2644.024 kb on + strand, within Psest_2474at 2644.025 kb on - strand, within Psest_2474at 2644.119 kb on + strand, within Psest_2474at 2644.172 kb on - strand, within Psest_2474at 2644.172 kb on - strand, within Psest_2474at 2644.172 kb on - strand, within Psest_2474at 2644.172 kb on - strand, within Psest_2474at 2644.172 kb on - strand, within Psest_2474at 2644.225 kb on + strand, within Psest_2474at 2644.450 kb on + strand, within Psest_2474at 2644.451 kb on - strand, within Psest_2474at 2644.451 kb on - strand, within Psest_2474at 2644.451 kb on - strand, within Psest_2474at 2644.729 kb on + strandat 2644.729 kb on + strandat 2644.899 kb on - strandat 2644.902 kb on - strandat 2644.902 kb on - strandat 2644.902 kb on - strandat 2644.902 kb on - strandat 2645.213 kb on - strand, within Psest_2475at 2645.213 kb on - strand, within Psest_2475at 2645.277 kb on + strand, within Psest_2475at 2645.277 kb on + strand, within Psest_2475at 2645.277 kb on + strand, within Psest_2475at 2645.452 kb on + strand, within Psest_2475at 2645.452 kb on + strand, within Psest_2475at 2645.688 kb on + strand, within Psest_2475at 2645.778 kb on + strand, within Psest_2475at 2645.779 kb on - strand, within Psest_2475at 2645.779 kb on - strand, within Psest_2475at 2645.779 kb on - strand, within Psest_2475at 2645.779 kb on - strand, within Psest_2475at 2645.881 kb on - strand, within Psest_2475at 2646.045 kb on + strandat 2646.045 kb on + strandat 2646.045 kb on + strandat 2646.046 kb on - strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.072 kb on + strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.073 kb on - strandat 2646.249 kb on + strandat 2646.372 kb on + strand, within Psest_2476at 2646.372 kb on + strand, within Psest_2476at 2646.470 kb on - strand, within Psest_2476at 2646.549 kb on + strand, within Psest_2476at 2646.550 kb on - strand, within Psest_2476at 2646.711 kb on + strand, within Psest_2476at 2646.712 kb on - strand, within Psest_2476at 2647.011 kb on + strand, within Psest_2476at 2647.093 kb on + strand, within Psest_2476at 2647.093 kb on + strand, within Psest_2476at 2647.093 kb on + strand, within Psest_2476at 2647.093 kb on + strand, within Psest_2476at 2647.093 kb on + strand, within Psest_2476at 2647.094 kb on - strand, within Psest_2476at 2647.094 kb on - strand, within Psest_2476

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,644,024 + Psest_2474 0.27 -1.5
2,644,024 + Psest_2474 0.27 +0.6
2,644,025 - Psest_2474 0.27 -0.1
2,644,119 + Psest_2474 0.36 +1.6
2,644,172 - Psest_2474 0.41 +0.1
2,644,172 - Psest_2474 0.41 +0.0
2,644,172 - Psest_2474 0.41 +1.5
2,644,172 - Psest_2474 0.41 +1.8
2,644,172 - Psest_2474 0.41 -0.2
2,644,225 + Psest_2474 0.46 +0.1
2,644,450 + Psest_2474 0.68 +0.2
2,644,451 - Psest_2474 0.68 +0.4
2,644,451 - Psest_2474 0.68 +0.0
2,644,451 - Psest_2474 0.68 +0.6
2,644,729 + -0.0
2,644,729 + -0.1
2,644,899 - -1.2
2,644,902 - -0.5
2,644,902 - -0.3
2,644,902 - +0.5
2,644,902 - -0.5
2,645,213 - Psest_2475 0.22 -1.0
2,645,213 - Psest_2475 0.22 +0.6
2,645,277 + Psest_2475 0.27 -2.4
2,645,277 + Psest_2475 0.27 -0.8
2,645,277 + Psest_2475 0.27 -0.4
2,645,452 + Psest_2475 0.42 -2.0
2,645,452 + Psest_2475 0.42 -0.4
2,645,688 + Psest_2475 0.62 -0.2
2,645,778 + Psest_2475 0.69 +0.5
2,645,779 - Psest_2475 0.70 -0.1
2,645,779 - Psest_2475 0.70 -0.3
2,645,779 - Psest_2475 0.70 -0.6
2,645,779 - Psest_2475 0.70 -1.0
2,645,881 - Psest_2475 0.78 -0.4
2,646,045 + -1.4
2,646,045 + +0.2
2,646,045 + +0.7
2,646,046 - -1.4
2,646,072 + +1.4
2,646,072 + +0.2
2,646,072 + +0.9
2,646,072 + +0.6
2,646,072 + +0.4
2,646,072 + +0.4
2,646,072 + -0.5
2,646,072 + +0.3
2,646,072 + +0.4
2,646,073 - -2.7
2,646,073 - -0.2
2,646,073 - +0.2
2,646,073 - -0.2
2,646,073 - +0.9
2,646,073 - +0.3
2,646,073 - +1.0
2,646,249 + +0.6
2,646,372 + Psest_2476 0.18 -0.3
2,646,372 + Psest_2476 0.18 -0.4
2,646,470 - Psest_2476 0.26 +0.8
2,646,549 + Psest_2476 0.32 +1.0
2,646,550 - Psest_2476 0.32 -0.3
2,646,711 + Psest_2476 0.46 +1.1
2,646,712 - Psest_2476 0.46 +0.9
2,647,011 + Psest_2476 0.71 +0.5
2,647,093 + Psest_2476 0.78 -1.3
2,647,093 + Psest_2476 0.78 -0.3
2,647,093 + Psest_2476 0.78 -0.8
2,647,093 + Psest_2476 0.78 -0.3
2,647,093 + Psest_2476 0.78 +0.9
2,647,094 - Psest_2476 0.78 +0.5
2,647,094 - Psest_2476 0.78 +0.7

Or see this region's nucleotide sequence