Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3498

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3497 and Psest_3498 are separated by 105 nucleotidesPsest_3498 and Psest_3499 overlap by 4 nucleotidesPsest_3499 and Psest_3500 are separated by 74 nucleotides Psest_3497: Psest_3497 - Predicted metalloprotease, at 3,669,710 to 3,670,567 _3497 Psest_3498: Psest_3498 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,670,673 to 3,671,275 _3498 Psest_3499: Psest_3499 - acyl-CoA thioesterase II, at 3,671,272 to 3,672,141 _3499 Psest_3500: Psest_3500 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 3,672,216 to 3,672,770 _3500 Position (kb) 3670 3671 3672Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3669.744 kb on + strandat 3669.745 kb on - strandat 3669.809 kb on - strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.088 kb on + strand, within Psest_3497at 3670.089 kb on - strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.181 kb on + strand, within Psest_3497at 3670.182 kb on - strandat 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.182 kb on - strand, within Psest_3497at 3670.565 kb on + strandat 3670.629 kb on - strandat 3670.726 kb on - strandat 3670.726 kb on - strandat 3671.077 kb on - strand, within Psest_3498at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.402 kb on + strand, within Psest_3499at 3671.540 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.552 kb on + strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.553 kb on - strand, within Psest_3499at 3671.916 kb on - strand, within Psest_3499at 3671.955 kb on - strand, within Psest_3499at 3672.131 kb on - strandat 3672.131 kb on - strandat 3672.131 kb on - strandat 3672.217 kb on + strandat 3672.218 kb on - strandat 3672.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,669,744 + -0.7
3,669,745 - +0.4
3,669,809 - Psest_3497 0.12 +0.2
3,670,088 + Psest_3497 0.44 +0.8
3,670,088 + Psest_3497 0.44 +0.8
3,670,089 - Psest_3497 0.44 +1.1
3,670,181 + Psest_3497 0.55 -0.5
3,670,181 + Psest_3497 0.55 +0.3
3,670,181 + Psest_3497 0.55 -0.4
3,670,181 + Psest_3497 0.55 -0.5
3,670,182 - -0.2
3,670,182 - Psest_3497 0.55 -2.0
3,670,182 - Psest_3497 0.55 -0.5
3,670,182 - Psest_3497 0.55 -0.1
3,670,565 + +0.4
3,670,629 - -0.6
3,670,726 - +0.5
3,670,726 - +2.3
3,671,077 - Psest_3498 0.67 +1.4
3,671,402 + Psest_3499 0.15 -0.1
3,671,402 + Psest_3499 0.15 -0.0
3,671,402 + Psest_3499 0.15 -1.0
3,671,402 + Psest_3499 0.15 +0.3
3,671,540 + Psest_3499 0.31 -0.0
3,671,552 + Psest_3499 0.32 +0.0
3,671,552 + Psest_3499 0.32 -0.1
3,671,552 + Psest_3499 0.32 +0.2
3,671,552 + Psest_3499 0.32 +0.3
3,671,552 + Psest_3499 0.32 -0.2
3,671,553 - Psest_3499 0.32 +0.3
3,671,553 - Psest_3499 0.32 -1.6
3,671,553 - Psest_3499 0.32 -0.1
3,671,553 - Psest_3499 0.32 +0.3
3,671,916 - Psest_3499 0.74 -0.0
3,671,955 - Psest_3499 0.79 -0.1
3,672,131 - -2.8
3,672,131 - +0.5
3,672,131 - -0.1
3,672,217 + +0.1
3,672,218 - +0.5
3,672,218 - -2.6

Or see this region's nucleotide sequence