Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0298

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0296 and Psest_0297 are separated by 236 nucleotidesPsest_0297 and Psest_0298 are separated by 43 nucleotidesPsest_0298 and Psest_0299 are separated by 41 nucleotidesPsest_0299 and Psest_0300 are separated by 76 nucleotides Psest_0296: Psest_0296 - glutathione synthetase, prokaryotic, at 310,142 to 311,092 _0296 Psest_0297: Psest_0297 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,329 to 311,736 _0297 Psest_0298: Psest_0298 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 311,780 to 312,145 _0298 Psest_0299: Psest_0299 - Chemotaxis signal transduction protein, at 312,187 to 312,723 _0299 Psest_0300: Psest_0300 - Methyl-accepting chemotaxis protein, at 312,800 to 314,848 _0300 Position (kb) 311 312 313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.791 kb on + strand, within Psest_0296at 310.800 kb on + strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.801 kb on - strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.806 kb on + strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.807 kb on - strand, within Psest_0296at 310.960 kb on - strand, within Psest_0296at 310.978 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.980 kb on + strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 310.981 kb on - strand, within Psest_0296at 311.206 kb on + strandat 311.229 kb on + strandat 311.229 kb on + strandat 311.230 kb on - strandat 311.288 kb on + strandat 311.289 kb on - strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.299 kb on + strandat 311.300 kb on - strandat 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.417 kb on + strand, within Psest_0297at 311.418 kb on - strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.505 kb on + strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.506 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.629 kb on - strand, within Psest_0297at 311.768 kb on + strandat 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.822 kb on + strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.823 kb on - strand, within Psest_0298at 311.926 kb on - strand, within Psest_0298at 312.080 kb on + strand, within Psest_0298at 312.081 kb on - strand, within Psest_0298at 312.232 kb on - strandat 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.630 kb on + strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.631 kb on - strand, within Psest_0299at 312.707 kb on + strandat 312.708 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.722 kb on - strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.727 kb on + strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.728 kb on - strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.810 kb on + strandat 312.811 kb on - strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.817 kb on + strandat 312.818 kb on - strandat 312.825 kb on + strandat 312.891 kb on + strandat 312.891 kb on + strandat 312.892 kb on - strandat 312.892 kb on - strandat 312.914 kb on + strandat 312.915 kb on - strandat 312.923 kb on - strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.947 kb on + strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.948 kb on - strandat 312.975 kb on + strandat 312.976 kb on - strandat 312.976 kb on - strandat 313.083 kb on - strand, within Psest_0300

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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310,791 + Psest_0296 0.68 +0.0
310,791 + Psest_0296 0.68 -0.6
310,791 + Psest_0296 0.68 +0.3
310,791 + Psest_0296 0.68 +1.6
310,800 + Psest_0296 0.69 +0.0
310,801 - Psest_0296 0.69 +1.2
310,801 - Psest_0296 0.69 +2.2
310,801 - Psest_0296 0.69 -1.4
310,801 - Psest_0296 0.69 +1.1
310,806 + Psest_0296 0.70 -1.3
310,806 + Psest_0296 0.70 -0.6
310,806 + Psest_0296 0.70 -1.0
310,806 + Psest_0296 0.70 +2.2
310,806 + Psest_0296 0.70 +0.3
310,806 + Psest_0296 0.70 +0.6
310,807 - Psest_0296 0.70 +1.2
310,807 - Psest_0296 0.70 +0.3
310,807 - Psest_0296 0.70 +0.7
310,960 - Psest_0296 0.86 -1.0
310,978 + Psest_0296 0.88 +1.8
310,980 + Psest_0296 0.88 -0.7
310,980 + Psest_0296 0.88 -0.9
310,980 + Psest_0296 0.88 -0.9
310,980 + Psest_0296 0.88 -0.2
310,980 + Psest_0296 0.88 +0.5
310,980 + Psest_0296 0.88 -3.0
310,980 + Psest_0296 0.88 -0.4
310,981 - Psest_0296 0.88 +0.6
310,981 - Psest_0296 0.88 -0.9
310,981 - Psest_0296 0.88 -0.6
310,981 - Psest_0296 0.88 +1.3
310,981 - Psest_0296 0.88 +0.7
310,981 - Psest_0296 0.88 +1.1
310,981 - Psest_0296 0.88 -0.5
310,981 - Psest_0296 0.88 -0.4
310,981 - Psest_0296 0.88 +0.0
310,981 - Psest_0296 0.88 +0.8
310,981 - Psest_0296 0.88 +0.0
311,206 + -0.8
311,229 + +0.3
311,229 + -0.4
311,230 - -0.6
311,288 + -0.5
311,289 - +1.0
311,299 + -0.0
311,299 + +0.6
311,299 + -0.2
311,299 + -0.0
311,300 - -1.6
311,417 + Psest_0297 0.22 +0.3
311,417 + Psest_0297 0.22 +0.2
311,417 + Psest_0297 0.22 -2.1
311,417 + Psest_0297 0.22 -2.1
311,417 + Psest_0297 0.22 +2.7
311,418 - Psest_0297 0.22 -0.7
311,505 + Psest_0297 0.43 -2.3
311,505 + Psest_0297 0.43 -1.0
311,505 + Psest_0297 0.43 -0.8
311,505 + Psest_0297 0.43 -2.3
311,506 - Psest_0297 0.43 -1.1
311,506 - Psest_0297 0.43 -1.5
311,629 - Psest_0297 0.74 -2.8
311,629 - Psest_0297 0.74 -1.9
311,768 + +1.1
311,822 + Psest_0298 0.11 -0.1
311,822 + Psest_0298 0.11 -0.7
311,822 + Psest_0298 0.11 -2.7
311,822 + Psest_0298 0.11 -0.6
311,822 + Psest_0298 0.11 -1.6
311,822 + Psest_0298 0.11 -1.7
311,822 + Psest_0298 0.11 -0.4
311,822 + Psest_0298 0.11 -1.8
311,823 - Psest_0298 0.12 -0.2
311,823 - Psest_0298 0.12 -0.7
311,823 - Psest_0298 0.12 -2.4
311,823 - Psest_0298 0.12 -1.5
311,926 - Psest_0298 0.40 +0.7
312,080 + Psest_0298 0.82 -1.0
312,081 - Psest_0298 0.82 -1.7
312,232 - -0.3
312,630 + Psest_0299 0.82 +0.4
312,630 + Psest_0299 0.82 +0.3
312,630 + Psest_0299 0.82 +0.1
312,630 + Psest_0299 0.82 -0.2
312,630 + Psest_0299 0.82 -0.8
312,630 + Psest_0299 0.82 -0.8
312,630 + Psest_0299 0.82 +0.1
312,630 + Psest_0299 0.82 +0.0
312,630 + Psest_0299 0.82 +0.2
312,631 - Psest_0299 0.83 -3.9
312,631 - Psest_0299 0.83 -1.1
312,707 + +0.6
312,708 - +0.9
312,722 - -0.4
312,722 - -0.8
312,722 - -0.9
312,727 + -0.3
312,727 + -0.9
312,727 + -0.1
312,727 + -0.2
312,727 + -0.6
312,727 + -0.3
312,728 - -1.7
312,728 - -1.1
312,728 - -1.0
312,728 - -0.4
312,728 - -2.4
312,728 - -0.9
312,728 - +0.2
312,728 - +0.9
312,810 + -0.9
312,810 + -0.6
312,810 + -0.7
312,810 + -1.8
312,811 - -0.7
312,817 + -1.2
312,817 + +0.7
312,817 + -1.4
312,818 - -2.3
312,825 + -1.2
312,891 + -0.8
312,891 + -0.6
312,892 - -0.8
312,892 - -0.8
312,914 + -2.5
312,915 - -0.4
312,923 - -2.0
312,947 + -1.2
312,947 + -0.2
312,947 + -1.1
312,947 + -2.1
312,947 + -3.0
312,947 + -1.6
312,948 - -1.0
312,948 - -0.3
312,948 - -2.0
312,948 - -2.0
312,975 + -1.9
312,976 - -1.7
312,976 - -1.5
313,083 - Psest_0300 0.14 -2.8

Or see this region's nucleotide sequence