Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2380

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2379 and Psest_2380 overlap by 41 nucleotidesPsest_2380 and Psest_2381 are separated by 326 nucleotides Psest_2379: Psest_2379 - PAS domain S-box, at 2,529,008 to 2,531,617 _2379 Psest_2380: Psest_2380 - Uncharacterized conserved protein, at 2,531,577 to 2,532,740 _2380 Psest_2381: Psest_2381 - hypothetical protein, at 2,533,067 to 2,534,272 _2381 Position (kb) 2531 2532 2533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2530.579 kb on - strand, within Psest_2379at 2531.037 kb on + strand, within Psest_2379at 2531.038 kb on - strand, within Psest_2379at 2531.209 kb on + strand, within Psest_2379at 2531.467 kb on - strandat 2531.467 kb on - strandat 2531.467 kb on - strandat 2531.467 kb on - strandat 2531.662 kb on + strandat 2531.884 kb on + strand, within Psest_2380at 2531.884 kb on + strand, within Psest_2380at 2531.884 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.932 kb on + strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.933 kb on - strand, within Psest_2380at 2531.935 kb on + strand, within Psest_2380at 2531.936 kb on - strand, within Psest_2380at 2532.003 kb on + strand, within Psest_2380at 2532.022 kb on + strand, within Psest_2380at 2532.022 kb on + strand, within Psest_2380at 2532.022 kb on + strand, within Psest_2380at 2532.022 kb on + strand, within Psest_2380at 2532.022 kb on + strand, within Psest_2380at 2532.023 kb on - strand, within Psest_2380at 2532.023 kb on - strand, within Psest_2380at 2532.056 kb on - strand, within Psest_2380at 2532.163 kb on - strand, within Psest_2380at 2532.184 kb on + strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.200 kb on - strand, within Psest_2380at 2532.202 kb on + strand, within Psest_2380at 2532.202 kb on + strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.212 kb on + strand, within Psest_2380at 2532.212 kb on + strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.522 kb on - strand, within Psest_2380at 2532.522 kb on - strand, within Psest_2380at 2532.568 kb on + strand, within Psest_2380at 2532.605 kb on - strand, within Psest_2380at 2532.717 kb on + strandat 2532.718 kb on - strandat 2532.793 kb on + strandat 2532.809 kb on + strandat 2532.810 kb on - strandat 2532.835 kb on + strandat 2532.835 kb on + strandat 2532.835 kb on + strandat 2532.836 kb on - strandat 2532.836 kb on - strandat 2532.839 kb on + strandat 2532.869 kb on + strandat 2532.992 kb on + strandat 2532.992 kb on + strandat 2532.992 kb on + strandat 2532.993 kb on - strandat 2532.993 kb on - strandat 2533.026 kb on + strandat 2533.026 kb on + strandat 2533.026 kb on + strandat 2533.027 kb on - strandat 2533.027 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.234 kb on + strand, within Psest_2381at 2533.303 kb on - strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.528 kb on - strand, within Psest_2381at 2533.528 kb on - strand, within Psest_2381at 2533.557 kb on + strand, within Psest_2381at 2533.611 kb on + strand, within Psest_2381at 2533.643 kb on - strand, within Psest_2381at 2533.645 kb on + strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,530,579 - Psest_2379 0.60 -3.3
2,531,037 + Psest_2379 0.78 -2.1
2,531,038 - Psest_2379 0.78 -1.9
2,531,209 + Psest_2379 0.84 -2.1
2,531,467 - -3.1
2,531,467 - -0.9
2,531,467 - -2.1
2,531,467 - -2.6
2,531,662 + -0.9
2,531,884 + Psest_2380 0.26 -1.3
2,531,884 + Psest_2380 0.26 -1.3
2,531,884 + Psest_2380 0.26 -1.5
2,531,932 + Psest_2380 0.30 -1.4
2,531,932 + Psest_2380 0.30 -1.0
2,531,932 + Psest_2380 0.30 -2.7
2,531,932 + Psest_2380 0.30 -2.0
2,531,932 + Psest_2380 0.30 -3.2
2,531,932 + Psest_2380 0.30 -1.1
2,531,932 + Psest_2380 0.30 -1.6
2,531,932 + Psest_2380 0.30 -1.1
2,531,932 + Psest_2380 0.30 -1.2
2,531,933 - Psest_2380 0.31 +0.4
2,531,933 - Psest_2380 0.31 -1.1
2,531,933 - Psest_2380 0.31 -2.1
2,531,933 - Psest_2380 0.31 -1.4
2,531,933 - Psest_2380 0.31 -1.1
2,531,933 - Psest_2380 0.31 -1.6
2,531,935 + Psest_2380 0.31 -0.9
2,531,936 - Psest_2380 0.31 -2.0
2,532,003 + Psest_2380 0.37 -2.6
2,532,022 + Psest_2380 0.38 -3.2
2,532,022 + Psest_2380 0.38 -2.3
2,532,022 + Psest_2380 0.38 -3.0
2,532,022 + Psest_2380 0.38 -2.5
2,532,022 + Psest_2380 0.38 -3.1
2,532,023 - Psest_2380 0.38 -2.3
2,532,023 - Psest_2380 0.38 -2.6
2,532,056 - Psest_2380 0.41 -1.1
2,532,163 - Psest_2380 0.50 -1.1
2,532,184 + Psest_2380 0.52 -1.8
2,532,185 - Psest_2380 0.52 -2.7
2,532,185 - Psest_2380 0.52 +0.1
2,532,185 - Psest_2380 0.52 -2.3
2,532,185 - Psest_2380 0.52 -1.5
2,532,200 - Psest_2380 0.54 -1.9
2,532,202 + Psest_2380 0.54 +0.9
2,532,202 + Psest_2380 0.54 +0.1
2,532,203 - Psest_2380 0.54 -2.1
2,532,203 - Psest_2380 0.54 -1.8
2,532,203 - Psest_2380 0.54 -4.0
2,532,203 - Psest_2380 0.54 -1.8
2,532,203 - Psest_2380 0.54 -0.7
2,532,208 + Psest_2380 0.54 -1.2
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -1.1
2,532,208 + Psest_2380 0.54 -1.7
2,532,208 + Psest_2380 0.54 -2.3
2,532,208 + Psest_2380 0.54 -1.8
2,532,208 + Psest_2380 0.54 -3.5
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -1.5
2,532,208 + Psest_2380 0.54 -1.3
2,532,208 + Psest_2380 0.54 -1.7
2,532,208 + Psest_2380 0.54 -2.1
2,532,208 + Psest_2380 0.54 -2.3
2,532,208 + Psest_2380 0.54 -0.5
2,532,208 + Psest_2380 0.54 -2.0
2,532,208 + Psest_2380 0.54 +1.2
2,532,208 + Psest_2380 0.54 -3.1
2,532,208 + Psest_2380 0.54 -1.6
2,532,208 + Psest_2380 0.54 -2.3
2,532,208 + Psest_2380 0.54 -1.6
2,532,208 + Psest_2380 0.54 -0.6
2,532,208 + Psest_2380 0.54 -0.6
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -2.3
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -1.1
2,532,208 + Psest_2380 0.54 +0.4
2,532,209 - Psest_2380 0.54 -2.1
2,532,209 - Psest_2380 0.54 -1.9
2,532,209 - Psest_2380 0.54 -1.8
2,532,209 - Psest_2380 0.54 -2.4
2,532,209 - Psest_2380 0.54 -2.3
2,532,209 - Psest_2380 0.54 -1.4
2,532,209 - Psest_2380 0.54 -2.3
2,532,209 - Psest_2380 0.54 -1.3
2,532,209 - Psest_2380 0.54 +0.2
2,532,209 - Psest_2380 0.54 -2.0
2,532,209 - Psest_2380 0.54 -2.6
2,532,209 - Psest_2380 0.54 +0.7
2,532,209 - Psest_2380 0.54 -0.4
2,532,209 - Psest_2380 0.54 -2.2
2,532,209 - Psest_2380 0.54 -1.8
2,532,209 - Psest_2380 0.54 -1.6
2,532,209 - Psest_2380 0.54 -1.9
2,532,209 - Psest_2380 0.54 -0.6
2,532,209 - Psest_2380 0.54 -2.1
2,532,209 - Psest_2380 0.54 -1.7
2,532,209 - Psest_2380 0.54 -2.7
2,532,209 - Psest_2380 0.54 -2.6
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 -2.8
2,532,209 - Psest_2380 0.54 -2.0
2,532,209 - Psest_2380 0.54 -1.8
2,532,209 - Psest_2380 0.54 -2.4
2,532,209 - Psest_2380 0.54 -2.8
2,532,209 - Psest_2380 0.54 -1.0
2,532,209 - Psest_2380 0.54 -0.9
2,532,209 - Psest_2380 0.54 -2.0
2,532,209 - Psest_2380 0.54 -1.9
2,532,209 - Psest_2380 0.54 -2.5
2,532,209 - Psest_2380 0.54 -1.7
2,532,209 - Psest_2380 0.54 -1.2
2,532,209 - Psest_2380 0.54 -1.3
2,532,209 - Psest_2380 0.54 -3.4
2,532,212 + Psest_2380 0.55 -1.5
2,532,212 + Psest_2380 0.55 -1.4
2,532,213 - Psest_2380 0.55 +1.2
2,532,213 - Psest_2380 0.55 -3.1
2,532,213 - Psest_2380 0.55 -2.6
2,532,522 - Psest_2380 0.81 -1.2
2,532,522 - Psest_2380 0.81 -1.5
2,532,568 + Psest_2380 0.85 -2.1
2,532,605 - Psest_2380 0.88 +0.0
2,532,717 + -2.3
2,532,718 - -1.1
2,532,793 + -1.3
2,532,809 + -2.6
2,532,810 - -0.9
2,532,835 + -0.5
2,532,835 + -0.5
2,532,835 + -1.1
2,532,836 - -0.1
2,532,836 - -0.5
2,532,839 + -0.6
2,532,869 + +0.7
2,532,992 + +0.1
2,532,992 + +0.1
2,532,992 + -0.8
2,532,993 - +0.0
2,532,993 - -0.3
2,533,026 + -0.1
2,533,026 + -0.4
2,533,026 + -0.1
2,533,027 - +0.4
2,533,027 - -0.5
2,533,069 - -1.1
2,533,069 - -0.2
2,533,069 - -1.0
2,533,069 - -0.3
2,533,234 + Psest_2381 0.14 +1.0
2,533,303 - Psest_2381 0.20 -0.4
2,533,527 + Psest_2381 0.38 -0.3
2,533,527 + Psest_2381 0.38 +0.1
2,533,527 + Psest_2381 0.38 -0.7
2,533,527 + Psest_2381 0.38 +1.7
2,533,527 + Psest_2381 0.38 -1.6
2,533,527 + Psest_2381 0.38 -0.0
2,533,527 + Psest_2381 0.38 -0.1
2,533,528 - Psest_2381 0.38 +0.6
2,533,528 - Psest_2381 0.38 -0.3
2,533,557 + Psest_2381 0.41 +0.8
2,533,611 + Psest_2381 0.45 +0.8
2,533,643 - Psest_2381 0.48 -0.6
2,533,645 + Psest_2381 0.48 -1.1
2,533,646 - Psest_2381 0.48 -0.3
2,533,646 - Psest_2381 0.48 -1.3
2,533,705 - Psest_2381 0.53 +0.3
2,533,705 - Psest_2381 0.53 -1.1
2,533,705 - Psest_2381 0.53 -0.0

Or see this region's nucleotide sequence