Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2270 and Psest_2271 overlap by 29 nucleotides Psest_2271 and Psest_2272 are separated by 93 nucleotides Psest_2272 and Psest_2273 are separated by 86 nucleotides
Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463
_2270
Psest_2271: Psest_2271 - coenzyme PQQ biosynthesis protein PqqD, at 2,421,435 to 2,421,713
_2271
Psest_2272: Psest_2272 - coenzyme PQQ biosynthesis protein C, at 2,421,807 to 2,422,559
_2272
Psest_2273: Psest_2273 - coenzyme PQQ biosynthesis protein B, at 2,422,646 to 2,423,557
_2273
Position (kb)
2421
2422 Strain fitness (log2 ratio)
-2
-1
0
1 at 2420.548 kb on - strand, within Psest_2270 at 2420.610 kb on - strand, within Psest_2270 at 2420.730 kb on + strand, within Psest_2270 at 2420.733 kb on + strand, within Psest_2270 at 2420.819 kb on + strand, within Psest_2270 at 2420.819 kb on + strand, within Psest_2270 at 2420.820 kb on - strand, within Psest_2270 at 2420.874 kb on + strand, within Psest_2270 at 2420.887 kb on + strand, within Psest_2270 at 2421.104 kb on - strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.180 kb on + strand, within Psest_2270 at 2421.181 kb on - strand, within Psest_2270 at 2421.215 kb on + strand, within Psest_2270 at 2421.215 kb on + strand, within Psest_2270 at 2421.294 kb on - strand, within Psest_2270 at 2421.384 kb on + strand at 2421.384 kb on + strand at 2421.385 kb on - strand at 2421.385 kb on - strand at 2421.385 kb on - strand at 2421.630 kb on + strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.631 kb on - strand, within Psest_2271 at 2421.731 kb on + strand at 2421.731 kb on + strand at 2421.809 kb on - strand at 2421.857 kb on - strand at 2421.877 kb on + strand at 2421.877 kb on + strand at 2421.877 kb on + strand at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.944 kb on + strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2421.945 kb on - strand, within Psest_2272 at 2422.039 kb on + strand, within Psest_2272 at 2422.086 kb on - strand, within Psest_2272 at 2422.180 kb on + strand, within Psest_2272 at 2422.180 kb on + strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.181 kb on - strand, within Psest_2272 at 2422.395 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.409 kb on - strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.462 kb on + strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.463 kb on - strand, within Psest_2272 at 2422.495 kb on + strand at 2422.495 kb on + strand at 2422.496 kb on - strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.498 kb on + strand at 2422.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 2,420,548 - Psest_2270 0.21 -0.6 2,420,610 - Psest_2270 0.26 -2.1 2,420,730 + Psest_2270 0.36 +0.3 2,420,733 + Psest_2270 0.37 +0.0 2,420,819 + Psest_2270 0.44 +0.5 2,420,819 + Psest_2270 0.44 -2.0 2,420,820 - Psest_2270 0.44 +0.3 2,420,874 + Psest_2270 0.49 +0.2 2,420,887 + Psest_2270 0.50 +1.6 2,421,104 - Psest_2270 0.69 +0.7 2,421,180 + Psest_2270 0.75 -0.3 2,421,180 + Psest_2270 0.75 +0.6 2,421,180 + Psest_2270 0.75 -0.7 2,421,181 - Psest_2270 0.75 +0.6 2,421,215 + Psest_2270 0.78 -0.1 2,421,215 + Psest_2270 0.78 -0.6 2,421,294 - Psest_2270 0.85 +0.8 2,421,384 + -0.5 2,421,384 + +0.7 2,421,385 - +0.3 2,421,385 - +1.2 2,421,385 - -0.2 2,421,630 + Psest_2271 0.70 -0.9 2,421,631 - Psest_2271 0.70 -2.0 2,421,631 - Psest_2271 0.70 -1.2 2,421,631 - Psest_2271 0.70 -0.8 2,421,631 - Psest_2271 0.70 -0.2 2,421,631 - Psest_2271 0.70 -0.4 2,421,731 + +0.3 2,421,731 + +1.1 2,421,809 - +0.2 2,421,857 - +0.9 2,421,877 + -1.5 2,421,877 + +0.0 2,421,877 + +0.8 2,421,944 + Psest_2272 0.18 -0.7 2,421,944 + Psest_2272 0.18 +0.8 2,421,944 + Psest_2272 0.18 -1.1 2,421,944 + Psest_2272 0.18 +0.0 2,421,944 + Psest_2272 0.18 -0.3 2,421,944 + Psest_2272 0.18 +0.1 2,421,945 - Psest_2272 0.18 -1.2 2,421,945 - Psest_2272 0.18 +0.3 2,421,945 - Psest_2272 0.18 -0.3 2,422,039 + Psest_2272 0.31 +0.2 2,422,086 - Psest_2272 0.37 +0.2 2,422,180 + Psest_2272 0.50 +0.6 2,422,180 + Psest_2272 0.50 -0.6 2,422,181 - Psest_2272 0.50 +0.2 2,422,181 - Psest_2272 0.50 +0.1 2,422,181 - Psest_2272 0.50 -0.1 2,422,181 - Psest_2272 0.50 +0.2 2,422,395 - Psest_2272 0.78 -0.6 2,422,409 - Psest_2272 0.80 +0.6 2,422,409 - Psest_2272 0.80 -0.0 2,422,409 - Psest_2272 0.80 +0.2 2,422,462 + Psest_2272 0.87 -1.3 2,422,462 + Psest_2272 0.87 -0.1 2,422,462 + Psest_2272 0.87 +0.2 2,422,462 + Psest_2272 0.87 +0.1 2,422,463 - Psest_2272 0.87 +0.5 2,422,463 - Psest_2272 0.87 +1.3 2,422,463 - Psest_2272 0.87 -0.3 2,422,463 - Psest_2272 0.87 -0.9 2,422,463 - Psest_2272 0.87 +0.4 2,422,463 - Psest_2272 0.87 -0.4 2,422,463 - Psest_2272 0.87 +0.6 2,422,463 - Psest_2272 0.87 -0.6 2,422,463 - Psest_2272 0.87 -0.2 2,422,463 - Psest_2272 0.87 +0.5 2,422,495 + +0.5 2,422,495 + -1.0 2,422,496 - -0.5 2,422,498 + -0.4 2,422,498 + -1.8 2,422,498 + -0.5 2,422,498 + -0.7 2,422,499 - -0.3
Or see this region's nucleotide sequence