Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0786 and Psest_0787 are separated by 363 nucleotides Psest_0787 and Psest_0788 overlap by 17 nucleotides Psest_0788 and Psest_0789 are separated by 216 nucleotides
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164
_0788
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.821 kb on + strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 859.822 kb on - strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.079 kb on + strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.080 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.105 kb on - strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.112 kb on + strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.113 kb on - strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.161 kb on + strand, within Psest_0786 at 860.162 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.268 kb on - strand, within Psest_0786 at 860.562 kb on + strand at 860.566 kb on - strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.766 kb on + strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.767 kb on - strand at 860.802 kb on + strand at 860.958 kb on + strand, within Psest_0787 at 861.057 kb on + strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.058 kb on - strand, within Psest_0787 at 861.180 kb on + strand, within Psest_0787 at 861.352 kb on - strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.438 kb on + strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.439 kb on - strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.471 kb on + strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.472 kb on - strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.644 kb on + strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.645 kb on - strand, within Psest_0787 at 861.699 kb on + strand at 861.699 kb on + strand at 861.699 kb on + strand at 861.700 kb on - strand at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.788 kb on + strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.789 kb on - strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.884 kb on + strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.885 kb on - strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.886 kb on + strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 861.887 kb on - strand, within Psest_0788 at 862.142 kb on + strand at 862.153 kb on - strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.198 kb on + strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.199 kb on - strand at 862.220 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.227 kb on + strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.228 kb on - strand at 862.230 kb on - strand at 862.230 kb on - strand at 862.247 kb on - strand at 862.248 kb on + strand at 862.249 kb on - strand at 862.337 kb on - strand at 862.431 kb on + strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.432 kb on - strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.618 kb on + strand, within Psest_0789 at 862.619 kb on - strand, within Psest_0789 at 862.625 kb on + strand, within Psest_0789 at 862.626 kb on - strand, within Psest_0789
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 859,821 + Psest_0786 0.44 +1.1 859,821 + Psest_0786 0.44 -0.7 859,821 + Psest_0786 0.44 -0.8 859,821 + Psest_0786 0.44 +0.4 859,821 + Psest_0786 0.44 -0.3 859,822 - Psest_0786 0.44 +0.4 859,822 - Psest_0786 0.44 +1.7 859,822 - Psest_0786 0.44 +1.6 860,079 + Psest_0786 0.69 -1.2 860,079 + Psest_0786 0.69 +0.5 860,079 + Psest_0786 0.69 +0.7 860,079 + Psest_0786 0.69 -3.0 860,079 + Psest_0786 0.69 -0.4 860,079 + Psest_0786 0.69 -0.2 860,079 + Psest_0786 0.69 -1.6 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 +1.4 860,079 + Psest_0786 0.69 +0.6 860,079 + Psest_0786 0.69 -0.7 860,079 + Psest_0786 0.69 +1.6 860,079 + Psest_0786 0.69 -0.9 860,079 + Psest_0786 0.69 +1.5 860,079 + Psest_0786 0.69 +1.4 860,079 + Psest_0786 0.69 +0.3 860,079 + Psest_0786 0.69 -0.1 860,079 + Psest_0786 0.69 +0.2 860,080 - Psest_0786 0.69 -0.0 860,080 - Psest_0786 0.69 -0.5 860,080 - Psest_0786 0.69 -0.5 860,080 - Psest_0786 0.69 +0.2 860,080 - Psest_0786 0.69 -1.0 860,080 - Psest_0786 0.69 -1.9 860,080 - Psest_0786 0.69 +1.2 860,080 - Psest_0786 0.69 +1.4 860,080 - Psest_0786 0.69 -1.1 860,080 - Psest_0786 0.69 -0.0 860,080 - Psest_0786 0.69 -0.5 860,080 - Psest_0786 0.69 +1.9 860,080 - Psest_0786 0.69 +0.8 860,080 - Psest_0786 0.69 -0.1 860,080 - Psest_0786 0.69 -2.1 860,080 - Psest_0786 0.69 -1.9 860,080 - Psest_0786 0.69 -0.9 860,080 - Psest_0786 0.69 +0.8 860,080 - Psest_0786 0.69 -2.9 860,080 - Psest_0786 0.69 -2.2 860,080 - Psest_0786 0.69 -0.2 860,080 - Psest_0786 0.69 +0.5 860,080 - Psest_0786 0.69 +0.3 860,080 - Psest_0786 0.69 +0.6 860,080 - Psest_0786 0.69 -2.5 860,105 - Psest_0786 0.71 +0.5 860,105 - Psest_0786 0.71 -0.0 860,105 - Psest_0786 0.71 +1.2 860,112 + Psest_0786 0.72 -0.5 860,112 + Psest_0786 0.72 -0.4 860,112 + Psest_0786 0.72 -1.8 860,112 + Psest_0786 0.72 -0.9 860,112 + Psest_0786 0.72 -2.3 860,112 + Psest_0786 0.72 -0.0 860,112 + Psest_0786 0.72 -2.6 860,112 + Psest_0786 0.72 +1.3 860,112 + Psest_0786 0.72 -0.2 860,112 + Psest_0786 0.72 -0.0 860,112 + Psest_0786 0.72 -1.7 860,112 + Psest_0786 0.72 +1.2 860,112 + Psest_0786 0.72 +0.5 860,112 + Psest_0786 0.72 -1.3 860,112 + Psest_0786 0.72 -0.9 860,112 + Psest_0786 0.72 +0.1 860,112 + Psest_0786 0.72 +1.1 860,112 + Psest_0786 0.72 +2.5 860,113 - Psest_0786 0.72 +0.9 860,113 - Psest_0786 0.72 -1.3 860,113 - Psest_0786 0.72 +1.0 860,113 - Psest_0786 0.72 +2.4 860,113 - Psest_0786 0.72 +1.4 860,113 - Psest_0786 0.72 +0.0 860,113 - Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 +0.0 860,113 - Psest_0786 0.72 +0.2 860,113 - Psest_0786 0.72 +0.3 860,113 - Psest_0786 0.72 +0.0 860,113 - Psest_0786 0.72 +0.8 860,113 - Psest_0786 0.72 -0.5 860,113 - Psest_0786 0.72 +0.3 860,113 - Psest_0786 0.72 +1.0 860,113 - Psest_0786 0.72 +2.6 860,113 - Psest_0786 0.72 +1.9 860,113 - Psest_0786 0.72 -2.0 860,161 + Psest_0786 0.77 -0.5 860,161 + Psest_0786 0.77 -0.4 860,162 - Psest_0786 0.77 -0.6 860,268 - Psest_0786 0.87 +0.2 860,268 - Psest_0786 0.87 -0.2 860,562 + -1.1 860,566 - -1.0 860,766 + -1.1 860,766 + +0.8 860,766 + +0.3 860,766 + +0.3 860,766 + +1.3 860,766 + +1.4 860,767 - +2.7 860,767 - +0.5 860,767 - +0.7 860,767 - +0.4 860,767 - -1.2 860,767 - -0.9 860,767 - +3.3 860,767 - -0.6 860,767 - +1.9 860,767 - +3.1 860,802 + -1.1 860,958 + Psest_0787 0.20 +1.5 861,057 + Psest_0787 0.29 -0.3 861,058 - Psest_0787 0.30 +0.5 861,058 - Psest_0787 0.30 +0.8 861,058 - Psest_0787 0.30 -2.4 861,058 - Psest_0787 0.30 +0.8 861,180 + Psest_0787 0.42 +0.4 861,352 - Psest_0787 0.59 +0.1 861,438 + Psest_0787 0.68 +2.9 861,438 + Psest_0787 0.68 +1.9 861,438 + Psest_0787 0.68 +0.5 861,439 - Psest_0787 0.68 +0.4 861,439 - Psest_0787 0.68 -1.4 861,439 - Psest_0787 0.68 +0.2 861,439 - Psest_0787 0.68 +1.4 861,439 - Psest_0787 0.68 -0.2 861,439 - Psest_0787 0.68 -0.1 861,439 - Psest_0787 0.68 -0.9 861,471 + Psest_0787 0.71 +1.5 861,471 + Psest_0787 0.71 +1.3 861,472 - Psest_0787 0.71 +1.4 861,472 - Psest_0787 0.71 -3.1 861,472 - Psest_0787 0.71 +0.0 861,472 - Psest_0787 0.71 +1.5 861,472 - Psest_0787 0.71 -0.0 861,472 - Psest_0787 0.71 +0.3 861,472 - Psest_0787 0.71 +0.1 861,472 - Psest_0787 0.71 +0.8 861,472 - Psest_0787 0.71 +1.5 861,644 + Psest_0787 0.88 -0.4 861,644 + Psest_0787 0.88 +1.9 861,644 + Psest_0787 0.88 +1.6 861,644 + Psest_0787 0.88 +0.5 861,645 - Psest_0787 0.88 -0.5 861,645 - Psest_0787 0.88 -0.8 861,699 + -1.2 861,699 + +0.9 861,699 + +0.7 861,700 - +0.2 861,788 + Psest_0788 0.10 +0.8 861,788 + Psest_0788 0.10 +1.2 861,788 + Psest_0788 0.10 +1.0 861,788 + Psest_0788 0.10 -0.5 861,789 - Psest_0788 0.10 +0.2 861,789 - Psest_0788 0.10 -1.5 861,789 - Psest_0788 0.10 -1.2 861,789 - Psest_0788 0.10 -0.2 861,884 + Psest_0788 0.33 -1.4 861,884 + Psest_0788 0.33 +1.1 861,884 + Psest_0788 0.33 +1.4 861,884 + Psest_0788 0.33 -1.9 861,885 - Psest_0788 0.33 -0.3 861,885 - Psest_0788 0.33 -1.2 861,886 + Psest_0788 0.34 +0.6 861,886 + Psest_0788 0.34 +2.0 861,886 + Psest_0788 0.34 -2.2 861,886 + Psest_0788 0.34 +0.2 861,886 + Psest_0788 0.34 +0.6 861,886 + Psest_0788 0.34 +2.1 861,886 + Psest_0788 0.34 +0.3 861,886 + Psest_0788 0.34 -0.6 861,886 + Psest_0788 0.34 -2.5 861,886 + Psest_0788 0.34 +0.2 861,887 - Psest_0788 0.34 +2.1 861,887 - Psest_0788 0.34 -1.3 861,887 - Psest_0788 0.34 -0.7 861,887 - Psest_0788 0.34 +0.8 861,887 - Psest_0788 0.34 +0.5 861,887 - Psest_0788 0.34 -2.8 861,887 - Psest_0788 0.34 -0.0 861,887 - Psest_0788 0.34 -1.4 861,887 - Psest_0788 0.34 -2.4 861,887 - Psest_0788 0.34 +1.3 861,887 - Psest_0788 0.34 -1.5 861,887 - Psest_0788 0.34 -0.5 861,887 - Psest_0788 0.34 -0.6 862,142 + -0.1 862,153 - -0.9 862,198 + +2.2 862,198 + +0.7 862,198 + -0.5 862,198 + +2.5 862,198 + +1.5 862,198 + +1.3 862,198 + +0.4 862,198 + -0.1 862,199 - -0.6 862,199 - +0.8 862,199 - +0.1 862,199 - -1.3 862,199 - +0.4 862,199 - -1.6 862,199 - -1.5 862,199 - -0.0 862,199 - -1.9 862,199 - -0.3 862,199 - +2.5 862,220 + +1.2 862,227 + -2.3 862,227 + -0.3 862,227 + +1.1 862,227 + -1.0 862,227 + +1.7 862,227 + +0.3 862,227 + -2.5 862,227 + +1.8 862,227 + -1.5 862,227 + +1.6 862,227 + -0.9 862,227 + +4.1 862,227 + +1.9 862,227 + +1.7 862,227 + -1.0 862,227 + +0.4 862,227 + +0.7 862,227 + +0.9 862,228 - +1.0 862,228 - +0.3 862,228 - +0.7 862,228 - -2.0 862,228 - +1.2 862,228 - -0.3 862,228 - -0.2 862,228 - -0.2 862,228 - -2.6 862,228 - -2.1 862,230 - -0.5 862,230 - +0.9 862,247 - +1.9 862,248 + -2.1 862,249 - +2.4 862,337 - +0.3 862,431 + Psest_0789 0.14 -0.1 862,432 - Psest_0789 0.14 +1.3 862,432 - Psest_0789 0.14 -2.4 862,618 + Psest_0789 0.67 +0.2 862,618 + Psest_0789 0.67 -1.0 862,618 + Psest_0789 0.67 +1.3 862,618 + Psest_0789 0.67 +1.0 862,618 + Psest_0789 0.67 +0.2 862,618 + Psest_0789 0.67 +0.4 862,619 - Psest_0789 0.67 +1.5 862,625 + Psest_0789 0.69 -0.6 862,626 - Psest_0789 0.69 +0.2
Or see this region's nucleotide sequence