Experiment: nitrite 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3115 and Psest_3116 overlap by 4 nucleotides Psest_3116 and Psest_3117 overlap by 4 nucleotides Psest_3117 and Psest_3118 are separated by 10 nucleotides
Psest_3115: Psest_3115 - electron transport complex, RnfABCDGE type, D subunit, at 3,293,284 to 3,294,312
_3115
Psest_3116: Psest_3116 - electron transport complex, RnfABCDGE type, G subunit, at 3,294,309 to 3,295,088
_3116
Psest_3117: Psest_3117 - electron transport complex, RnfABCDGE type, E subunit, at 3,295,085 to 3,295,798
_3117
Psest_3118: Psest_3118 - endonuclease III, at 3,295,809 to 3,296,447
_3118
Position (kb)
3294
3295
3296 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3293.665 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3294.154 kb on - strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.247 kb on + strand at 3294.250 kb on + strand at 3294.250 kb on + strand at 3294.250 kb on + strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.251 kb on - strand at 3294.268 kb on + strand at 3294.268 kb on + strand at 3294.268 kb on + strand at 3294.428 kb on + strand, within Psest_3116 at 3294.428 kb on + strand, within Psest_3116 at 3294.458 kb on - strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.492 kb on + strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.493 kb on - strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.567 kb on + strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.568 kb on - strand, within Psest_3116 at 3294.631 kb on - strand, within Psest_3116 at 3294.900 kb on + strand, within Psest_3116 at 3294.900 kb on + strand, within Psest_3116 at 3294.901 kb on - strand, within Psest_3116 at 3295.364 kb on + strand, within Psest_3117 at 3295.365 kb on - strand, within Psest_3117 at 3295.365 kb on - strand, within Psest_3117 at 3295.365 kb on - strand, within Psest_3117 at 3295.365 kb on - strand, within Psest_3117 at 3295.373 kb on + strand, within Psest_3117 at 3295.374 kb on - strand, within Psest_3117 at 3295.519 kb on - strand, within Psest_3117 at 3295.519 kb on - strand, within Psest_3117 at 3295.628 kb on + strand, within Psest_3117 at 3295.628 kb on + strand, within Psest_3117 at 3295.628 kb on + strand, within Psest_3117 at 3295.629 kb on - strand, within Psest_3117 at 3295.884 kb on + strand, within Psest_3118 at 3295.884 kb on + strand, within Psest_3118 at 3295.884 kb on + strand, within Psest_3118 at 3295.885 kb on - strand, within Psest_3118 at 3295.885 kb on - strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.001 kb on + strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.002 kb on - strand, within Psest_3118 at 3296.031 kb on + strand, within Psest_3118 at 3296.031 kb on + strand, within Psest_3118 at 3296.031 kb on + strand, within Psest_3118 at 3296.032 kb on - strand, within Psest_3118 at 3296.032 kb on - strand, within Psest_3118
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 2.5 mM remove 3,293,665 + Psest_3115 0.37 +4.1 3,293,807 + Psest_3115 0.51 +1.5 3,293,807 + Psest_3115 0.51 -0.5 3,293,807 + Psest_3115 0.51 +2.8 3,293,807 + Psest_3115 0.51 +3.2 3,293,807 + Psest_3115 0.51 +1.1 3,293,807 + Psest_3115 0.51 +0.8 3,293,808 - Psest_3115 0.51 +3.5 3,293,808 - Psest_3115 0.51 -0.9 3,293,808 - Psest_3115 0.51 +3.4 3,293,808 - Psest_3115 0.51 +1.3 3,293,808 - Psest_3115 0.51 +1.1 3,293,984 + Psest_3115 0.68 +1.2 3,293,984 + Psest_3115 0.68 +2.1 3,293,984 + Psest_3115 0.68 +0.6 3,293,984 + Psest_3115 0.68 +1.0 3,293,985 - Psest_3115 0.68 +1.5 3,293,985 - Psest_3115 0.68 -0.6 3,293,985 - Psest_3115 0.68 +1.2 3,293,985 - Psest_3115 0.68 -0.9 3,293,985 - Psest_3115 0.68 +1.7 3,294,154 - Psest_3115 0.85 +0.4 3,294,163 + Psest_3115 0.85 +0.4 3,294,163 + Psest_3115 0.85 +2.0 3,294,163 + Psest_3115 0.85 +3.3 3,294,163 + Psest_3115 0.85 +2.7 3,294,163 + Psest_3115 0.85 +2.8 3,294,163 + Psest_3115 0.85 +0.8 3,294,163 + Psest_3115 0.85 +1.6 3,294,163 + Psest_3115 0.85 +2.0 3,294,164 - Psest_3115 0.86 +2.5 3,294,164 - Psest_3115 0.86 +1.9 3,294,164 - Psest_3115 0.86 +2.5 3,294,164 - Psest_3115 0.86 +1.7 3,294,164 - Psest_3115 0.86 +1.0 3,294,164 - Psest_3115 0.86 +1.7 3,294,247 + -1.0 3,294,250 + +1.7 3,294,250 + +0.9 3,294,250 + +1.1 3,294,251 - -0.2 3,294,251 - +0.4 3,294,251 - +4.4 3,294,251 - +2.6 3,294,251 - +1.5 3,294,251 - +1.2 3,294,268 + +1.3 3,294,268 + +2.1 3,294,268 + -0.5 3,294,428 + Psest_3116 0.15 +2.6 3,294,428 + Psest_3116 0.15 +1.3 3,294,458 - Psest_3116 0.19 +0.2 3,294,492 + Psest_3116 0.23 +0.6 3,294,492 + Psest_3116 0.23 +1.6 3,294,492 + Psest_3116 0.23 -0.3 3,294,492 + Psest_3116 0.23 +1.4 3,294,493 - Psest_3116 0.24 +2.4 3,294,493 - Psest_3116 0.24 +0.8 3,294,493 - Psest_3116 0.24 +3.4 3,294,493 - Psest_3116 0.24 +2.8 3,294,567 + Psest_3116 0.33 +0.0 3,294,567 + Psest_3116 0.33 -0.2 3,294,567 + Psest_3116 0.33 +0.7 3,294,567 + Psest_3116 0.33 -0.8 3,294,567 + Psest_3116 0.33 +0.5 3,294,567 + Psest_3116 0.33 -0.1 3,294,567 + Psest_3116 0.33 +0.6 3,294,567 + Psest_3116 0.33 -0.3 3,294,567 + Psest_3116 0.33 -0.7 3,294,568 - Psest_3116 0.33 +0.9 3,294,568 - Psest_3116 0.33 +2.7 3,294,568 - Psest_3116 0.33 +2.4 3,294,568 - Psest_3116 0.33 +0.5 3,294,568 - Psest_3116 0.33 +2.6 3,294,568 - Psest_3116 0.33 +2.3 3,294,568 - Psest_3116 0.33 +1.7 3,294,631 - Psest_3116 0.41 +0.4 3,294,900 + Psest_3116 0.76 +0.2 3,294,900 + Psest_3116 0.76 -0.4 3,294,901 - Psest_3116 0.76 +2.8 3,295,364 + Psest_3117 0.39 +2.5 3,295,365 - Psest_3117 0.39 -0.0 3,295,365 - Psest_3117 0.39 +3.7 3,295,365 - Psest_3117 0.39 +2.4 3,295,365 - Psest_3117 0.39 +0.1 3,295,373 + Psest_3117 0.40 +0.4 3,295,374 - Psest_3117 0.40 +0.7 3,295,519 - Psest_3117 0.61 +2.0 3,295,519 - Psest_3117 0.61 +5.0 3,295,628 + Psest_3117 0.76 +1.6 3,295,628 + Psest_3117 0.76 +2.7 3,295,628 + Psest_3117 0.76 +1.9 3,295,629 - Psest_3117 0.76 +1.2 3,295,884 + Psest_3118 0.12 -1.3 3,295,884 + Psest_3118 0.12 +0.8 3,295,884 + Psest_3118 0.12 +0.8 3,295,885 - Psest_3118 0.12 -0.3 3,295,885 - Psest_3118 0.12 -0.1 3,296,001 + Psest_3118 0.30 -1.4 3,296,001 + Psest_3118 0.30 -0.7 3,296,001 + Psest_3118 0.30 -0.0 3,296,001 + Psest_3118 0.30 -0.7 3,296,001 + Psest_3118 0.30 -2.0 3,296,001 + Psest_3118 0.30 -1.0 3,296,001 + Psest_3118 0.30 +0.1 3,296,002 - Psest_3118 0.30 +0.9 3,296,002 - Psest_3118 0.30 +0.8 3,296,002 - Psest_3118 0.30 +1.1 3,296,002 - Psest_3118 0.30 +1.0 3,296,002 - Psest_3118 0.30 -2.4 3,296,002 - Psest_3118 0.30 +0.1 3,296,002 - Psest_3118 0.30 -1.7 3,296,002 - Psest_3118 0.30 +1.4 3,296,002 - Psest_3118 0.30 -0.2 3,296,031 + Psest_3118 0.35 +1.3 3,296,031 + Psest_3118 0.35 -0.3 3,296,031 + Psest_3118 0.35 -1.3 3,296,032 - Psest_3118 0.35 -1.2 3,296,032 - Psest_3118 0.35 -1.6
Or see this region's nucleotide sequence