Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0328

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0327 and Psest_0328 are separated by 95 nucleotidesPsest_0328 and Psest_0329 are separated by 107 nucleotides Psest_0327: Psest_0327 - Transcriptional regulator, at 349,860 to 350,798 _0327 Psest_0328: Psest_0328 - transketolase, bacterial and yeast, at 350,894 to 352,891 _0328 Psest_0329: Psest_0329 - erythrose-4-phosphate dehydrogenase, at 352,999 to 354,045 _0329 Position (kb) 350 351 352 353Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 349.902 kb on + strandat 349.903 kb on - strandat 349.903 kb on - strandat 350.033 kb on - strand, within Psest_0327at 350.139 kb on - strand, within Psest_0327at 350.139 kb on - strand, within Psest_0327at 350.178 kb on - strand, within Psest_0327at 350.424 kb on - strand, within Psest_0327at 350.424 kb on - strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.685 kb on + strand, within Psest_0327at 350.685 kb on + strand, within Psest_0327at 350.686 kb on - strand, within Psest_0327at 350.686 kb on - strand, within Psest_0327at 350.742 kb on + strandat 350.867 kb on + strandat 350.867 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
349,902 + -2.4
349,903 - -0.1
349,903 - -0.0
350,033 - Psest_0327 0.18 +0.8
350,139 - Psest_0327 0.30 -1.0
350,139 - Psest_0327 0.30 -0.1
350,178 - Psest_0327 0.34 -1.0
350,424 - Psest_0327 0.60 -2.7
350,424 - Psest_0327 0.60 -2.2
350,682 + Psest_0327 0.88 -3.8
350,682 + Psest_0327 0.88 -4.1
350,682 + Psest_0327 0.88 -2.7
350,683 - Psest_0327 0.88 -5.0
350,683 - Psest_0327 0.88 -4.1
350,683 - Psest_0327 0.88 -3.1
350,683 - Psest_0327 0.88 -1.8
350,683 - Psest_0327 0.88 -4.0
350,683 - Psest_0327 0.88 -1.5
350,683 - Psest_0327 0.88 -2.1
350,683 - Psest_0327 0.88 -2.1
350,683 - Psest_0327 0.88 -5.5
350,683 - Psest_0327 0.88 -2.7
350,683 - Psest_0327 0.88 -3.7
350,685 + Psest_0327 0.88 -1.7
350,685 + Psest_0327 0.88 -4.2
350,686 - Psest_0327 0.88 -4.4
350,686 - Psest_0327 0.88 -6.3
350,742 + -4.1
350,867 + +1.9
350,867 + -1.8
350,871 + -0.1
350,871 + -1.2
350,871 + -0.2
350,871 + -0.4
350,871 + +1.3
350,871 + +0.9

Or see this region's nucleotide sequence