Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0769

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0767 and Psest_0768 are separated by 3 nucleotidesPsest_0768 and Psest_0769 are separated by 135 nucleotidesPsest_0769 and Psest_0770 are separated by 47 nucleotidesPsest_0770 and Psest_0771 are separated by 118 nucleotides Psest_0767: Psest_0767 - diguanylate cyclase (GGDEF) domain, at 836,230 to 837,636 _0767 Psest_0768: Psest_0768 - Uncharacterized conserved protein, at 837,640 to 838,467 _0768 Psest_0769: Psest_0769 - Predicted membrane protein, at 838,603 to 839,331 _0769 Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723 _0770 Psest_0771: Psest_0771 - Acyl-CoA hydrolase, at 839,842 to 840,345 _0771 Position (kb) 838 839 840Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.671 kb on + strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.672 kb on - strandat 837.768 kb on - strand, within Psest_0768at 837.939 kb on + strand, within Psest_0768at 837.940 kb on - strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.031 kb on + strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.032 kb on - strand, within Psest_0768at 838.091 kb on + strand, within Psest_0768at 838.184 kb on + strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.185 kb on - strand, within Psest_0768at 838.242 kb on + strand, within Psest_0768at 838.243 kb on - strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.244 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.328 kb on + strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.329 kb on - strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.355 kb on + strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.356 kb on - strand, within Psest_0768at 838.526 kb on + strandat 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.747 kb on + strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 838.748 kb on - strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.041 kb on + strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.042 kb on - strand, within Psest_0769at 839.074 kb on + strand, within Psest_0769at 839.075 kb on - strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.215 kb on + strand, within Psest_0769at 839.292 kb on + strandat 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.677 kb on + strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.678 kb on - strand, within Psest_0770at 839.683 kb on + strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.684 kb on - strand, within Psest_0770at 839.765 kb on + strandat 839.765 kb on + strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.766 kb on - strandat 839.837 kb on - strandat 839.837 kb on - strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.843 kb on + strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.844 kb on - strandat 839.889 kb on - strandat 839.928 kb on - strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.113 kb on + strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.114 kb on - strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.200 kb on + strand, within Psest_0771at 840.201 kb on - strand, within Psest_0771at 840.230 kb on + strand, within Psest_0771at 840.231 kb on - strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.248 kb on + strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.249 kb on - strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.271 kb on + strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771at 840.272 kb on - strand, within Psest_0771

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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837,671 + -1.5
837,671 + -0.4
837,671 + -1.0
837,671 + -1.3
837,672 - -0.3
837,672 - -0.8
837,672 - -0.9
837,768 - Psest_0768 0.15 -1.8
837,939 + Psest_0768 0.36 -0.2
837,940 - Psest_0768 0.36 +1.0
838,031 + Psest_0768 0.47 -0.9
838,031 + Psest_0768 0.47 -1.1
838,032 - Psest_0768 0.47 +4.2
838,032 - Psest_0768 0.47 +1.3
838,032 - Psest_0768 0.47 -0.2
838,032 - Psest_0768 0.47 +0.5
838,032 - Psest_0768 0.47 -0.3
838,091 + Psest_0768 0.54 -2.1
838,184 + Psest_0768 0.66 -0.9
838,185 - Psest_0768 0.66 -1.7
838,185 - Psest_0768 0.66 +0.3
838,242 + Psest_0768 0.73 +0.1
838,243 - Psest_0768 0.73 -0.0
838,244 + Psest_0768 0.73 +1.8
838,244 + Psest_0768 0.73 +0.2
838,328 + Psest_0768 0.83 +2.4
838,328 + Psest_0768 0.83 -1.6
838,328 + Psest_0768 0.83 -0.5
838,328 + Psest_0768 0.83 -2.2
838,329 - Psest_0768 0.83 -0.2
838,329 - Psest_0768 0.83 +1.1
838,355 + Psest_0768 0.86 -1.9
838,355 + Psest_0768 0.86 +0.6
838,355 + Psest_0768 0.86 -0.2
838,355 + Psest_0768 0.86 -0.4
838,355 + Psest_0768 0.86 -1.5
838,355 + Psest_0768 0.86 -1.0
838,356 - Psest_0768 0.86 +0.9
838,356 - Psest_0768 0.86 -0.3
838,356 - Psest_0768 0.86 +2.2
838,526 + +0.3
838,747 + Psest_0769 0.20 +0.8
838,747 + Psest_0769 0.20 -0.9
838,747 + Psest_0769 0.20 -1.3
838,747 + Psest_0769 0.20 +0.9
838,747 + Psest_0769 0.20 -1.0
838,747 + Psest_0769 0.20 -1.1
838,747 + Psest_0769 0.20 +0.8
838,747 + Psest_0769 0.20 +1.3
838,747 + Psest_0769 0.20 +0.7
838,747 + Psest_0769 0.20 -0.3
838,747 + Psest_0769 0.20 -1.9
838,747 + Psest_0769 0.20 -0.5
838,748 - Psest_0769 0.20 +0.1
838,748 - Psest_0769 0.20 -0.3
838,748 - Psest_0769 0.20 -2.7
838,748 - Psest_0769 0.20 +1.2
838,748 - Psest_0769 0.20 -0.6
838,748 - Psest_0769 0.20 -1.0
839,041 + Psest_0769 0.60 -1.3
839,041 + Psest_0769 0.60 +0.4
839,041 + Psest_0769 0.60 +2.7
839,042 - Psest_0769 0.60 -1.0
839,042 - Psest_0769 0.60 -1.7
839,074 + Psest_0769 0.65 -1.8
839,075 - Psest_0769 0.65 -0.6
839,215 + Psest_0769 0.84 -1.2
839,215 + Psest_0769 0.84 -0.7
839,292 + +0.2
839,677 + Psest_0770 0.86 -0.6
839,677 + Psest_0770 0.86 -0.0
839,677 + Psest_0770 0.86 -0.1
839,678 - Psest_0770 0.87 -0.3
839,678 - Psest_0770 0.87 -1.2
839,678 - Psest_0770 0.87 +1.2
839,678 - Psest_0770 0.87 -0.7
839,678 - Psest_0770 0.87 +0.0
839,683 + Psest_0770 0.88 +0.8
839,684 - Psest_0770 0.88 -0.6
839,684 - Psest_0770 0.88 -2.0
839,765 + -0.5
839,765 + +0.6
839,766 - -0.1
839,766 - +0.9
839,766 - -1.3
839,766 - -0.0
839,766 - -1.4
839,837 - +1.8
839,837 - +0.1
839,843 + +0.6
839,843 + -1.2
839,843 + +2.7
839,844 - +1.5
839,844 - -0.0
839,844 - +0.0
839,889 - +0.6
839,928 - Psest_0771 0.17 +3.1
840,113 + Psest_0771 0.54 -0.8
840,113 + Psest_0771 0.54 -0.9
840,113 + Psest_0771 0.54 +1.3
840,113 + Psest_0771 0.54 +0.9
840,114 - Psest_0771 0.54 +0.3
840,114 - Psest_0771 0.54 +0.2
840,114 - Psest_0771 0.54 +1.3
840,114 - Psest_0771 0.54 +0.3
840,200 + Psest_0771 0.71 -0.3
840,200 + Psest_0771 0.71 +2.0
840,200 + Psest_0771 0.71 -0.9
840,200 + Psest_0771 0.71 -1.1
840,200 + Psest_0771 0.71 +1.8
840,200 + Psest_0771 0.71 +1.0
840,200 + Psest_0771 0.71 +0.8
840,200 + Psest_0771 0.71 -1.1
840,201 - Psest_0771 0.71 +1.0
840,230 + Psest_0771 0.77 -0.2
840,231 - Psest_0771 0.77 -0.3
840,248 + Psest_0771 0.81 -0.6
840,248 + Psest_0771 0.81 +0.9
840,248 + Psest_0771 0.81 +0.2
840,249 - Psest_0771 0.81 -1.0
840,249 - Psest_0771 0.81 +0.8
840,271 + Psest_0771 0.85 -0.3
840,271 + Psest_0771 0.85 -1.8
840,271 + Psest_0771 0.85 +0.3
840,271 + Psest_0771 0.85 -0.1
840,271 + Psest_0771 0.85 -0.6
840,271 + Psest_0771 0.85 +0.4
840,271 + Psest_0771 0.85 -0.8
840,271 + Psest_0771 0.85 -0.5
840,271 + Psest_0771 0.85 -0.9
840,271 + Psest_0771 0.85 -0.3
840,271 + Psest_0771 0.85 -2.5
840,271 + Psest_0771 0.85 +1.1
840,271 + Psest_0771 0.85 -0.6
840,271 + Psest_0771 0.85 +1.1
840,272 - Psest_0771 0.85 -0.6
840,272 - Psest_0771 0.85 +0.7
840,272 - Psest_0771 0.85 -0.7
840,272 - Psest_0771 0.85 +0.8
840,272 - Psest_0771 0.85 +0.8
840,272 - Psest_0771 0.85 -0.6
840,272 - Psest_0771 0.85 -1.9
840,272 - Psest_0771 0.85 +0.0
840,272 - Psest_0771 0.85 -0.2
840,272 - Psest_0771 0.85 -0.2
840,272 - Psest_0771 0.85 -1.0
840,272 - Psest_0771 0.85 +1.0
840,272 - Psest_0771 0.85 +0.1
840,272 - Psest_0771 0.85 -0.3
840,272 - Psest_0771 0.85 -1.2

Or see this region's nucleotide sequence