Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0442 and Psest_0443 are separated by 432 nucleotides Psest_0443 and Psest_0444 are separated by 127 nucleotides Psest_0444 and Psest_0445 are separated by 111 nucleotides
Psest_0442: Psest_0442 - ATPases of the AAA+ class, at 482,192 to 483,178
_0442
Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156
_0443
Psest_0444: Psest_0444 - methionine-S-sulfoxide reductase, at 484,284 to 484,706
_0444
Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490
_0445
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 482.753 kb on + strand, within Psest_0442 at 482.753 kb on + strand, within Psest_0442 at 482.821 kb on + strand, within Psest_0442 at 482.864 kb on + strand, within Psest_0442 at 482.873 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.923 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.933 kb on + strand, within Psest_0442 at 482.979 kb on + strand, within Psest_0442 at 482.979 kb on + strand, within Psest_0442 at 482.998 kb on + strand, within Psest_0442 at 482.998 kb on + strand, within Psest_0442 at 483.001 kb on + strand, within Psest_0442 at 483.001 kb on + strand, within Psest_0442 at 483.091 kb on + strand at 483.215 kb on + strand at 483.215 kb on + strand at 483.402 kb on - strand at 483.506 kb on + strand at 483.528 kb on + strand at 483.529 kb on - strand at 483.694 kb on + strand, within Psest_0443 at 483.764 kb on + strand, within Psest_0443 at 483.816 kb on - strand, within Psest_0443 at 483.837 kb on - strand, within Psest_0443 at 483.906 kb on - strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.019 kb on + strand, within Psest_0443 at 484.020 kb on - strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.021 kb on + strand, within Psest_0443 at 484.022 kb on - strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.029 kb on + strand, within Psest_0443 at 484.030 kb on - strand, within Psest_0443 at 484.059 kb on + strand, within Psest_0443 at 484.136 kb on + strand at 484.169 kb on - strand at 484.169 kb on - strand at 484.231 kb on + strand at 484.231 kb on + strand at 484.232 kb on - strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.251 kb on + strand at 484.252 kb on - strand at 484.252 kb on - strand at 484.252 kb on - strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.255 kb on + strand at 484.285 kb on + strand at 484.285 kb on + strand at 484.290 kb on + strand at 484.290 kb on + strand at 484.291 kb on - strand at 484.296 kb on + strand at 484.296 kb on + strand at 484.296 kb on + strand at 484.314 kb on + strand at 484.390 kb on - strand, within Psest_0444 at 484.441 kb on + strand, within Psest_0444 at 484.442 kb on - strand, within Psest_0444 at 484.471 kb on + strand, within Psest_0444 at 484.548 kb on + strand, within Psest_0444 at 484.549 kb on - strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.603 kb on + strand, within Psest_0444 at 484.604 kb on - strand, within Psest_0444 at 484.604 kb on - strand, within Psest_0444 at 484.618 kb on - strand, within Psest_0444 at 484.624 kb on - strand, within Psest_0444 at 484.738 kb on + strand at 484.738 kb on + strand at 484.739 kb on - strand at 484.739 kb on - strand at 484.739 kb on - strand at 484.743 kb on + strand at 484.744 kb on - strand at 484.760 kb on + strand at 484.761 kb on - strand at 484.761 kb on - strand at 484.888 kb on + strand at 484.888 kb on + strand at 484.889 kb on - strand at 485.036 kb on + strand at 485.093 kb on - strand, within Psest_0445
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 482,753 + Psest_0442 0.57 +3.0 482,753 + Psest_0442 0.57 +0.4 482,821 + Psest_0442 0.64 +1.6 482,864 + Psest_0442 0.68 +1.0 482,873 + Psest_0442 0.69 +1.6 482,923 + Psest_0442 0.74 +2.0 482,923 + Psest_0442 0.74 +0.6 482,923 + Psest_0442 0.74 +1.4 482,923 + Psest_0442 0.74 +2.4 482,933 + Psest_0442 0.75 +1.6 482,933 + Psest_0442 0.75 +1.4 482,933 + Psest_0442 0.75 +3.0 482,933 + Psest_0442 0.75 +3.0 482,933 + Psest_0442 0.75 +2.4 482,979 + Psest_0442 0.80 +4.0 482,979 + Psest_0442 0.80 +1.4 482,998 + Psest_0442 0.82 +2.0 482,998 + Psest_0442 0.82 +4.0 483,001 + Psest_0442 0.82 +0.6 483,001 + Psest_0442 0.82 +2.4 483,091 + +3.0 483,215 + +1.2 483,215 + +0.4 483,402 - +1.6 483,506 + +0.5 483,528 + +0.3 483,529 - -0.9 483,694 + Psest_0443 0.15 +2.5 483,764 + Psest_0443 0.28 -0.7 483,816 - Psest_0443 0.38 +2.2 483,837 - Psest_0443 0.41 +0.8 483,906 - Psest_0443 0.54 -1.8 484,019 + Psest_0443 0.75 -0.8 484,019 + Psest_0443 0.75 +0.7 484,019 + Psest_0443 0.75 +0.2 484,019 + Psest_0443 0.75 -0.3 484,019 + Psest_0443 0.75 -0.1 484,019 + Psest_0443 0.75 -1.3 484,019 + Psest_0443 0.75 +11.3 484,019 + Psest_0443 0.75 -1.5 484,020 - Psest_0443 0.75 +0.7 484,021 + Psest_0443 0.75 +1.4 484,021 + Psest_0443 0.75 -1.8 484,021 + Psest_0443 0.75 -0.4 484,021 + Psest_0443 0.75 +0.5 484,022 - Psest_0443 0.75 +1.2 484,029 + Psest_0443 0.77 -1.2 484,029 + Psest_0443 0.77 -0.0 484,029 + Psest_0443 0.77 +0.4 484,029 + Psest_0443 0.77 +0.4 484,029 + Psest_0443 0.77 +0.5 484,029 + Psest_0443 0.77 +1.4 484,029 + Psest_0443 0.77 -1.5 484,029 + Psest_0443 0.77 -0.6 484,029 + Psest_0443 0.77 -0.8 484,030 - Psest_0443 0.77 -0.4 484,059 + Psest_0443 0.82 +1.3 484,136 + -2.0 484,169 - +0.1 484,169 - +0.2 484,231 + -1.8 484,231 + +4.7 484,232 - -0.5 484,251 + +0.2 484,251 + -0.2 484,251 + +1.2 484,251 + +1.2 484,251 + +4.2 484,251 + -0.3 484,251 + +0.2 484,251 + -0.2 484,251 + -1.0 484,252 - +1.5 484,252 - +2.1 484,252 - +3.2 484,255 + -0.2 484,255 + -0.6 484,255 + -1.0 484,255 + +0.1 484,255 + +1.8 484,255 + -0.2 484,285 + +0.5 484,285 + +0.5 484,290 + -0.3 484,290 + -0.5 484,291 - -0.2 484,296 + +0.0 484,296 + -0.4 484,296 + -0.1 484,314 + -0.5 484,390 - Psest_0444 0.25 +0.1 484,441 + Psest_0444 0.37 +0.9 484,442 - Psest_0444 0.37 +2.7 484,471 + Psest_0444 0.44 +2.2 484,548 + Psest_0444 0.62 +0.0 484,549 - Psest_0444 0.63 -0.0 484,603 + Psest_0444 0.75 -0.2 484,603 + Psest_0444 0.75 -1.6 484,603 + Psest_0444 0.75 +1.4 484,603 + Psest_0444 0.75 -0.0 484,603 + Psest_0444 0.75 +1.2 484,603 + Psest_0444 0.75 +1.7 484,603 + Psest_0444 0.75 -0.8 484,604 - Psest_0444 0.76 -1.3 484,604 - Psest_0444 0.76 +1.9 484,618 - Psest_0444 0.79 -1.8 484,624 - Psest_0444 0.80 -0.1 484,738 + +0.3 484,738 + -0.6 484,739 - +4.0 484,739 - +0.1 484,739 - -0.6 484,743 + -0.9 484,744 - +0.2 484,760 + -1.0 484,761 - -1.4 484,761 - +0.4 484,888 + -1.2 484,888 + -0.6 484,889 - +0.6 485,036 + +0.4 485,093 - Psest_0445 0.10 -0.1
Or see this region's nucleotide sequence