Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4221 and Psest_4222 are separated by 238 nucleotides Psest_4222 and Psest_4223 are separated by 39 nucleotides
Psest_4221: Psest_4221 - homoserine kinase, Neisseria type, at 4,401,235 to 4,402,188
_4221
Psest_4222: Psest_4222 - Predicted Rossmann fold nucleotide-binding protein, at 4,402,427 to 4,403,800
_4222
Psest_4223: Psest_4223 - Predicted membrane-associated, metal-dependent hydrolase, at 4,403,840 to 4,404,712
_4223
Position (kb)
4402
4403
4404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4401.865 kb on + strand, within Psest_4221 at 4401.866 kb on - strand, within Psest_4221 at 4401.866 kb on - strand, within Psest_4221 at 4401.866 kb on - strand, within Psest_4221 at 4401.893 kb on - strand, within Psest_4221 at 4401.979 kb on + strand, within Psest_4221 at 4402.172 kb on + strand at 4402.173 kb on - strand at 4402.173 kb on - strand at 4402.280 kb on + strand at 4402.280 kb on + strand at 4402.280 kb on + strand at 4402.281 kb on - strand at 4402.281 kb on - strand at 4402.409 kb on + strand at 4402.443 kb on + strand at 4402.443 kb on + strand at 4402.443 kb on + strand at 4402.443 kb on + strand at 4402.443 kb on + strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.444 kb on - strand at 4402.500 kb on + strand at 4402.500 kb on + strand at 4402.500 kb on + strand at 4402.501 kb on - strand at 4402.501 kb on - strand at 4402.501 kb on - strand at 4402.617 kb on - strand, within Psest_4222 at 4402.659 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.760 kb on + strand, within Psest_4222 at 4402.761 kb on - strand, within Psest_4222 at 4402.761 kb on - strand, within Psest_4222 at 4402.761 kb on - strand, within Psest_4222 at 4402.761 kb on - strand, within Psest_4222 at 4402.777 kb on - strand, within Psest_4222 at 4402.777 kb on - strand, within Psest_4222 at 4402.777 kb on - strand, within Psest_4222 at 4402.823 kb on + strand, within Psest_4222 at 4402.823 kb on + strand, within Psest_4222 at 4402.823 kb on + strand, within Psest_4222 at 4402.823 kb on + strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.824 kb on - strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.922 kb on + strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.923 kb on - strand, within Psest_4222 at 4402.928 kb on + strand, within Psest_4222 at 4402.929 kb on - strand, within Psest_4222 at 4402.929 kb on - strand, within Psest_4222 at 4403.315 kb on + strand, within Psest_4222 at 4403.315 kb on + strand, within Psest_4222 at 4403.315 kb on + strand, within Psest_4222 at 4403.316 kb on - strand, within Psest_4222 at 4403.316 kb on - strand, within Psest_4222 at 4403.316 kb on - strand, within Psest_4222 at 4403.316 kb on - strand, within Psest_4222 at 4403.316 kb on - strand, within Psest_4222 at 4403.771 kb on + strand at 4403.838 kb on - strand at 4403.949 kb on + strand, within Psest_4223 at 4403.949 kb on + strand, within Psest_4223 at 4403.950 kb on - strand, within Psest_4223 at 4403.950 kb on - strand, within Psest_4223 at 4403.950 kb on - strand, within Psest_4223 at 4403.982 kb on + strand, within Psest_4223 at 4403.982 kb on + strand, within Psest_4223 at 4403.983 kb on - strand, within Psest_4223 at 4404.143 kb on + strand, within Psest_4223 at 4404.144 kb on - strand, within Psest_4223 at 4404.144 kb on - strand, within Psest_4223 at 4404.144 kb on - strand, within Psest_4223 at 4404.453 kb on + strand, within Psest_4223 at 4404.453 kb on + strand, within Psest_4223 at 4404.454 kb on - strand, within Psest_4223 at 4404.454 kb on - strand, within Psest_4223 at 4404.454 kb on - strand, within Psest_4223 at 4404.535 kb on + strand, within Psest_4223 at 4404.535 kb on + strand, within Psest_4223 at 4404.535 kb on + strand, within Psest_4223 at 4404.540 kb on + strand, within Psest_4223 at 4404.721 kb on - strand at 4404.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,401,865 + Psest_4221 0.66 -0.2 4,401,866 - Psest_4221 0.66 +0.4 4,401,866 - Psest_4221 0.66 -1.0 4,401,866 - Psest_4221 0.66 -0.1 4,401,893 - Psest_4221 0.69 -1.2 4,401,979 + Psest_4221 0.78 -1.5 4,402,172 + -1.9 4,402,173 - -1.0 4,402,173 - -1.5 4,402,280 + +1.5 4,402,280 + +1.2 4,402,280 + +0.3 4,402,281 - +0.4 4,402,281 - +0.4 4,402,409 + -1.8 4,402,443 + -0.6 4,402,443 + -1.2 4,402,443 + -1.5 4,402,443 + -3.5 4,402,443 + -0.0 4,402,444 - +0.3 4,402,444 - -0.1 4,402,444 - +0.5 4,402,444 - +2.1 4,402,444 - -1.3 4,402,444 - -1.6 4,402,444 - -1.1 4,402,444 - +2.1 4,402,444 - -0.9 4,402,500 + +0.4 4,402,500 + -0.5 4,402,500 + +1.3 4,402,501 - +0.5 4,402,501 - -1.2 4,402,501 - +0.8 4,402,617 - Psest_4222 0.14 +2.5 4,402,659 + Psest_4222 0.17 +0.7 4,402,760 + Psest_4222 0.24 -1.5 4,402,760 + Psest_4222 0.24 -1.0 4,402,760 + Psest_4222 0.24 -1.4 4,402,760 + Psest_4222 0.24 +0.6 4,402,760 + Psest_4222 0.24 +0.2 4,402,760 + Psest_4222 0.24 -1.3 4,402,761 - Psest_4222 0.24 +1.7 4,402,761 - Psest_4222 0.24 -1.2 4,402,761 - Psest_4222 0.24 -1.3 4,402,761 - Psest_4222 0.24 +1.1 4,402,777 - Psest_4222 0.25 -0.2 4,402,777 - Psest_4222 0.25 +1.3 4,402,777 - Psest_4222 0.25 +0.1 4,402,823 + Psest_4222 0.29 +0.5 4,402,823 + Psest_4222 0.29 -1.5 4,402,823 + Psest_4222 0.29 -0.7 4,402,823 + Psest_4222 0.29 -1.3 4,402,824 - Psest_4222 0.29 +3.1 4,402,824 - Psest_4222 0.29 +1.1 4,402,824 - Psest_4222 0.29 -3.2 4,402,824 - Psest_4222 0.29 -1.6 4,402,824 - Psest_4222 0.29 -0.8 4,402,824 - Psest_4222 0.29 -0.4 4,402,922 + Psest_4222 0.36 -1.8 4,402,922 + Psest_4222 0.36 -1.3 4,402,922 + Psest_4222 0.36 +0.4 4,402,922 + Psest_4222 0.36 -1.3 4,402,922 + Psest_4222 0.36 -0.8 4,402,922 + Psest_4222 0.36 -2.2 4,402,922 + Psest_4222 0.36 -0.7 4,402,922 + Psest_4222 0.36 +1.4 4,402,922 + Psest_4222 0.36 +1.8 4,402,922 + Psest_4222 0.36 +0.1 4,402,922 + Psest_4222 0.36 -1.7 4,402,922 + Psest_4222 0.36 -2.1 4,402,923 - Psest_4222 0.36 -0.3 4,402,923 - Psest_4222 0.36 -1.8 4,402,923 - Psest_4222 0.36 -2.0 4,402,923 - Psest_4222 0.36 -0.6 4,402,923 - Psest_4222 0.36 -0.9 4,402,923 - Psest_4222 0.36 -1.5 4,402,928 + Psest_4222 0.36 -1.5 4,402,929 - Psest_4222 0.37 -1.5 4,402,929 - Psest_4222 0.37 -0.8 4,403,315 + Psest_4222 0.65 -0.5 4,403,315 + Psest_4222 0.65 -1.5 4,403,315 + Psest_4222 0.65 -0.7 4,403,316 - Psest_4222 0.65 -1.3 4,403,316 - Psest_4222 0.65 +1.1 4,403,316 - Psest_4222 0.65 +0.1 4,403,316 - Psest_4222 0.65 +0.3 4,403,316 - Psest_4222 0.65 -0.3 4,403,771 + -0.1 4,403,838 - -0.6 4,403,949 + Psest_4223 0.12 -0.4 4,403,949 + Psest_4223 0.12 +1.0 4,403,950 - Psest_4223 0.13 +0.9 4,403,950 - Psest_4223 0.13 -1.5 4,403,950 - Psest_4223 0.13 -2.7 4,403,982 + Psest_4223 0.16 -0.0 4,403,982 + Psest_4223 0.16 -0.6 4,403,983 - Psest_4223 0.16 -2.6 4,404,143 + Psest_4223 0.35 -1.7 4,404,144 - Psest_4223 0.35 +0.1 4,404,144 - Psest_4223 0.35 -0.0 4,404,144 - Psest_4223 0.35 -0.5 4,404,453 + Psest_4223 0.70 +0.6 4,404,453 + Psest_4223 0.70 -0.7 4,404,454 - Psest_4223 0.70 -1.2 4,404,454 - Psest_4223 0.70 +1.8 4,404,454 - Psest_4223 0.70 -0.4 4,404,535 + Psest_4223 0.80 +1.5 4,404,535 + Psest_4223 0.80 -0.7 4,404,535 + Psest_4223 0.80 +0.4 4,404,540 + Psest_4223 0.80 +1.7 4,404,721 - -0.8 4,404,721 - -0.1
Or see this region's nucleotide sequence