Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4222

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4221 and Psest_4222 are separated by 238 nucleotidesPsest_4222 and Psest_4223 are separated by 39 nucleotides Psest_4221: Psest_4221 - homoserine kinase, Neisseria type, at 4,401,235 to 4,402,188 _4221 Psest_4222: Psest_4222 - Predicted Rossmann fold nucleotide-binding protein, at 4,402,427 to 4,403,800 _4222 Psest_4223: Psest_4223 - Predicted membrane-associated, metal-dependent hydrolase, at 4,403,840 to 4,404,712 _4223 Position (kb) 4402 4403 4404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4401.865 kb on + strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.866 kb on - strand, within Psest_4221at 4401.893 kb on - strand, within Psest_4221at 4401.979 kb on + strand, within Psest_4221at 4402.172 kb on + strandat 4402.173 kb on - strandat 4402.173 kb on - strandat 4402.280 kb on + strandat 4402.280 kb on + strandat 4402.280 kb on + strandat 4402.281 kb on - strandat 4402.281 kb on - strandat 4402.409 kb on + strandat 4402.443 kb on + strandat 4402.443 kb on + strandat 4402.443 kb on + strandat 4402.443 kb on + strandat 4402.443 kb on + strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.444 kb on - strandat 4402.500 kb on + strandat 4402.500 kb on + strandat 4402.500 kb on + strandat 4402.501 kb on - strandat 4402.501 kb on - strandat 4402.501 kb on - strandat 4402.617 kb on - strand, within Psest_4222at 4402.659 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.760 kb on + strand, within Psest_4222at 4402.761 kb on - strand, within Psest_4222at 4402.761 kb on - strand, within Psest_4222at 4402.761 kb on - strand, within Psest_4222at 4402.761 kb on - strand, within Psest_4222at 4402.777 kb on - strand, within Psest_4222at 4402.777 kb on - strand, within Psest_4222at 4402.777 kb on - strand, within Psest_4222at 4402.823 kb on + strand, within Psest_4222at 4402.823 kb on + strand, within Psest_4222at 4402.823 kb on + strand, within Psest_4222at 4402.823 kb on + strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.824 kb on - strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.922 kb on + strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.923 kb on - strand, within Psest_4222at 4402.928 kb on + strand, within Psest_4222at 4402.929 kb on - strand, within Psest_4222at 4402.929 kb on - strand, within Psest_4222at 4403.315 kb on + strand, within Psest_4222at 4403.315 kb on + strand, within Psest_4222at 4403.315 kb on + strand, within Psest_4222at 4403.316 kb on - strand, within Psest_4222at 4403.316 kb on - strand, within Psest_4222at 4403.316 kb on - strand, within Psest_4222at 4403.316 kb on - strand, within Psest_4222at 4403.316 kb on - strand, within Psest_4222at 4403.771 kb on + strandat 4403.838 kb on - strandat 4403.949 kb on + strand, within Psest_4223at 4403.949 kb on + strand, within Psest_4223at 4403.950 kb on - strand, within Psest_4223at 4403.950 kb on - strand, within Psest_4223at 4403.950 kb on - strand, within Psest_4223at 4403.982 kb on + strand, within Psest_4223at 4403.982 kb on + strand, within Psest_4223at 4403.983 kb on - strand, within Psest_4223at 4404.143 kb on + strand, within Psest_4223at 4404.144 kb on - strand, within Psest_4223at 4404.144 kb on - strand, within Psest_4223at 4404.144 kb on - strand, within Psest_4223at 4404.453 kb on + strand, within Psest_4223at 4404.453 kb on + strand, within Psest_4223at 4404.454 kb on - strand, within Psest_4223at 4404.454 kb on - strand, within Psest_4223at 4404.454 kb on - strand, within Psest_4223at 4404.535 kb on + strand, within Psest_4223at 4404.535 kb on + strand, within Psest_4223at 4404.535 kb on + strand, within Psest_4223at 4404.540 kb on + strand, within Psest_4223at 4404.721 kb on - strandat 4404.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,401,865 + Psest_4221 0.66 -0.2
4,401,866 - Psest_4221 0.66 +0.4
4,401,866 - Psest_4221 0.66 -1.0
4,401,866 - Psest_4221 0.66 -0.1
4,401,893 - Psest_4221 0.69 -1.2
4,401,979 + Psest_4221 0.78 -1.5
4,402,172 + -1.9
4,402,173 - -1.0
4,402,173 - -1.5
4,402,280 + +1.5
4,402,280 + +1.2
4,402,280 + +0.3
4,402,281 - +0.4
4,402,281 - +0.4
4,402,409 + -1.8
4,402,443 + -0.6
4,402,443 + -1.2
4,402,443 + -1.5
4,402,443 + -3.5
4,402,443 + -0.0
4,402,444 - +0.3
4,402,444 - -0.1
4,402,444 - +0.5
4,402,444 - +2.1
4,402,444 - -1.3
4,402,444 - -1.6
4,402,444 - -1.1
4,402,444 - +2.1
4,402,444 - -0.9
4,402,500 + +0.4
4,402,500 + -0.5
4,402,500 + +1.3
4,402,501 - +0.5
4,402,501 - -1.2
4,402,501 - +0.8
4,402,617 - Psest_4222 0.14 +2.5
4,402,659 + Psest_4222 0.17 +0.7
4,402,760 + Psest_4222 0.24 -1.5
4,402,760 + Psest_4222 0.24 -1.0
4,402,760 + Psest_4222 0.24 -1.4
4,402,760 + Psest_4222 0.24 +0.6
4,402,760 + Psest_4222 0.24 +0.2
4,402,760 + Psest_4222 0.24 -1.3
4,402,761 - Psest_4222 0.24 +1.7
4,402,761 - Psest_4222 0.24 -1.2
4,402,761 - Psest_4222 0.24 -1.3
4,402,761 - Psest_4222 0.24 +1.1
4,402,777 - Psest_4222 0.25 -0.2
4,402,777 - Psest_4222 0.25 +1.3
4,402,777 - Psest_4222 0.25 +0.1
4,402,823 + Psest_4222 0.29 +0.5
4,402,823 + Psest_4222 0.29 -1.5
4,402,823 + Psest_4222 0.29 -0.7
4,402,823 + Psest_4222 0.29 -1.3
4,402,824 - Psest_4222 0.29 +3.1
4,402,824 - Psest_4222 0.29 +1.1
4,402,824 - Psest_4222 0.29 -3.2
4,402,824 - Psest_4222 0.29 -1.6
4,402,824 - Psest_4222 0.29 -0.8
4,402,824 - Psest_4222 0.29 -0.4
4,402,922 + Psest_4222 0.36 -1.8
4,402,922 + Psest_4222 0.36 -1.3
4,402,922 + Psest_4222 0.36 +0.4
4,402,922 + Psest_4222 0.36 -1.3
4,402,922 + Psest_4222 0.36 -0.8
4,402,922 + Psest_4222 0.36 -2.2
4,402,922 + Psest_4222 0.36 -0.7
4,402,922 + Psest_4222 0.36 +1.4
4,402,922 + Psest_4222 0.36 +1.8
4,402,922 + Psest_4222 0.36 +0.1
4,402,922 + Psest_4222 0.36 -1.7
4,402,922 + Psest_4222 0.36 -2.1
4,402,923 - Psest_4222 0.36 -0.3
4,402,923 - Psest_4222 0.36 -1.8
4,402,923 - Psest_4222 0.36 -2.0
4,402,923 - Psest_4222 0.36 -0.6
4,402,923 - Psest_4222 0.36 -0.9
4,402,923 - Psest_4222 0.36 -1.5
4,402,928 + Psest_4222 0.36 -1.5
4,402,929 - Psest_4222 0.37 -1.5
4,402,929 - Psest_4222 0.37 -0.8
4,403,315 + Psest_4222 0.65 -0.5
4,403,315 + Psest_4222 0.65 -1.5
4,403,315 + Psest_4222 0.65 -0.7
4,403,316 - Psest_4222 0.65 -1.3
4,403,316 - Psest_4222 0.65 +1.1
4,403,316 - Psest_4222 0.65 +0.1
4,403,316 - Psest_4222 0.65 +0.3
4,403,316 - Psest_4222 0.65 -0.3
4,403,771 + -0.1
4,403,838 - -0.6
4,403,949 + Psest_4223 0.12 -0.4
4,403,949 + Psest_4223 0.12 +1.0
4,403,950 - Psest_4223 0.13 +0.9
4,403,950 - Psest_4223 0.13 -1.5
4,403,950 - Psest_4223 0.13 -2.7
4,403,982 + Psest_4223 0.16 -0.0
4,403,982 + Psest_4223 0.16 -0.6
4,403,983 - Psest_4223 0.16 -2.6
4,404,143 + Psest_4223 0.35 -1.7
4,404,144 - Psest_4223 0.35 +0.1
4,404,144 - Psest_4223 0.35 -0.0
4,404,144 - Psest_4223 0.35 -0.5
4,404,453 + Psest_4223 0.70 +0.6
4,404,453 + Psest_4223 0.70 -0.7
4,404,454 - Psest_4223 0.70 -1.2
4,404,454 - Psest_4223 0.70 +1.8
4,404,454 - Psest_4223 0.70 -0.4
4,404,535 + Psest_4223 0.80 +1.5
4,404,535 + Psest_4223 0.80 -0.7
4,404,535 + Psest_4223 0.80 +0.4
4,404,540 + Psest_4223 0.80 +1.7
4,404,721 - -0.8
4,404,721 - -0.1

Or see this region's nucleotide sequence