Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4141

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_4140 and Psest_4141 are separated by 122 nucleotidesPsest_4141 and Psest_4142 are separated by 11 nucleotides Psest_4140: Psest_4140 - Acyl-CoA dehydrogenases, at 4,322,855 to 4,324,012 _4140 Psest_4141: Psest_4141 - 3-carboxymuconate cyclase, at 4,324,135 to 4,325,328 _4141 Psest_4142: Psest_4142 - hypothetical protein, at 4,325,340 to 4,326,377 _4142 Position (kb) 4324 4325 4326Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4323.267 kb on + strand, within Psest_4140at 4323.267 kb on + strand, within Psest_4140at 4323.267 kb on + strand, within Psest_4140at 4323.267 kb on + strand, within Psest_4140at 4323.268 kb on - strand, within Psest_4140at 4323.268 kb on - strand, within Psest_4140at 4323.268 kb on - strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.318 kb on + strand, within Psest_4140at 4323.319 kb on - strand, within Psest_4140at 4323.319 kb on - strand, within Psest_4140at 4323.319 kb on - strand, within Psest_4140at 4323.319 kb on - strand, within Psest_4140at 4323.319 kb on - strand, within Psest_4140at 4323.519 kb on + strand, within Psest_4140at 4323.519 kb on + strand, within Psest_4140at 4323.520 kb on - strand, within Psest_4140at 4323.520 kb on - strand, within Psest_4140at 4323.520 kb on - strand, within Psest_4140at 4323.520 kb on - strand, within Psest_4140at 4323.612 kb on + strand, within Psest_4140at 4323.612 kb on + strand, within Psest_4140at 4323.613 kb on - strand, within Psest_4140at 4323.613 kb on - strand, within Psest_4140at 4323.658 kb on + strand, within Psest_4140at 4323.659 kb on - strand, within Psest_4140at 4323.687 kb on + strand, within Psest_4140at 4323.687 kb on + strand, within Psest_4140at 4323.687 kb on + strand, within Psest_4140at 4323.687 kb on + strand, within Psest_4140at 4323.687 kb on + strand, within Psest_4140at 4323.688 kb on - strand, within Psest_4140at 4323.688 kb on - strand, within Psest_4140at 4323.688 kb on - strand, within Psest_4140at 4323.688 kb on - strandat 4324.013 kb on + strandat 4324.014 kb on - strandat 4324.078 kb on + strandat 4324.128 kb on + strandat 4324.128 kb on + strandat 4324.129 kb on - strandat 4324.129 kb on - strandat 4324.129 kb on - strandat 4324.140 kb on + strandat 4324.140 kb on + strandat 4324.140 kb on + strandat 4324.140 kb on + strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.141 kb on - strandat 4324.239 kb on + strandat 4324.261 kb on + strand, within Psest_4141at 4324.261 kb on + strand, within Psest_4141at 4324.262 kb on - strand, within Psest_4141at 4324.262 kb on - strand, within Psest_4141at 4324.262 kb on - strand, within Psest_4141at 4324.402 kb on + strand, within Psest_4141at 4324.473 kb on + strand, within Psest_4141at 4324.473 kb on + strand, within Psest_4141at 4324.474 kb on - strand, within Psest_4141at 4324.474 kb on - strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.573 kb on + strand, within Psest_4141at 4324.574 kb on - strand, within Psest_4141at 4324.574 kb on - strand, within Psest_4141at 4324.903 kb on + strand, within Psest_4141at 4324.903 kb on + strand, within Psest_4141at 4324.945 kb on + strand, within Psest_4141at 4324.946 kb on - strand, within Psest_4141at 4324.946 kb on - strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.031 kb on + strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.032 kb on - strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.056 kb on + strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.057 kb on - strand, within Psest_4141at 4325.536 kb on - strand, within Psest_4142at 4326.078 kb on - strand, within Psest_4142at 4326.173 kb on - strand, within Psest_4142

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
4,323,267 + Psest_4140 0.36 +0.4
4,323,267 + Psest_4140 0.36 +1.0
4,323,267 + Psest_4140 0.36 -0.8
4,323,267 + Psest_4140 0.36 -1.1
4,323,268 - Psest_4140 0.36 -1.1
4,323,268 - Psest_4140 0.36 +1.7
4,323,268 - Psest_4140 0.36 +1.9
4,323,318 + Psest_4140 0.40 +0.5
4,323,318 + Psest_4140 0.40 -0.4
4,323,318 + Psest_4140 0.40 -2.0
4,323,318 + Psest_4140 0.40 +1.6
4,323,318 + Psest_4140 0.40 +1.6
4,323,318 + Psest_4140 0.40 +1.1
4,323,318 + Psest_4140 0.40 -1.5
4,323,318 + Psest_4140 0.40 -0.9
4,323,318 + Psest_4140 0.40 +1.6
4,323,318 + Psest_4140 0.40 -0.2
4,323,318 + Psest_4140 0.40 +0.4
4,323,319 - Psest_4140 0.40 -0.2
4,323,319 - Psest_4140 0.40 +0.1
4,323,319 - Psest_4140 0.40 -1.4
4,323,319 - Psest_4140 0.40 +0.4
4,323,319 - Psest_4140 0.40 +0.9
4,323,519 + Psest_4140 0.57 +1.8
4,323,519 + Psest_4140 0.57 +0.3
4,323,520 - Psest_4140 0.57 -0.7
4,323,520 - Psest_4140 0.57 +0.6
4,323,520 - Psest_4140 0.57 +1.9
4,323,520 - Psest_4140 0.57 -0.1
4,323,612 + Psest_4140 0.65 +0.0
4,323,612 + Psest_4140 0.65 +0.0
4,323,613 - Psest_4140 0.65 +1.2
4,323,613 - Psest_4140 0.65 +1.2
4,323,658 + Psest_4140 0.69 +0.2
4,323,659 - Psest_4140 0.69 +2.0
4,323,687 + Psest_4140 0.72 -0.4
4,323,687 + Psest_4140 0.72 -2.0
4,323,687 + Psest_4140 0.72 -0.7
4,323,687 + Psest_4140 0.72 -1.9
4,323,687 + Psest_4140 0.72 -2.4
4,323,688 - Psest_4140 0.72 -1.2
4,323,688 - Psest_4140 0.72 +1.4
4,323,688 - Psest_4140 0.72 -0.2
4,323,688 - +1.4
4,324,013 + -1.7
4,324,014 - -0.1
4,324,078 + +1.3
4,324,128 + +0.8
4,324,128 + -0.8
4,324,129 - +5.6
4,324,129 - +6.3
4,324,129 - +4.8
4,324,140 + -0.3
4,324,140 + -0.4
4,324,140 + -0.3
4,324,140 + -1.2
4,324,141 - +6.7
4,324,141 - +5.9
4,324,141 - +6.5
4,324,141 - +5.5
4,324,141 - +6.0
4,324,141 - +6.6
4,324,141 - +4.5
4,324,141 - +6.6
4,324,141 - +5.9
4,324,141 - +7.4
4,324,239 + -2.1
4,324,261 + Psest_4141 0.11 +0.0
4,324,261 + Psest_4141 0.11 +0.9
4,324,262 - Psest_4141 0.11 +2.8
4,324,262 - Psest_4141 0.11 +6.6
4,324,262 - Psest_4141 0.11 +7.3
4,324,402 + Psest_4141 0.22 -0.1
4,324,473 + Psest_4141 0.28 -0.1
4,324,473 + Psest_4141 0.28 -0.3
4,324,474 - Psest_4141 0.28 +3.8
4,324,474 - Psest_4141 0.28 +5.7
4,324,573 + Psest_4141 0.37 +0.7
4,324,573 + Psest_4141 0.37 +2.5
4,324,573 + Psest_4141 0.37 -0.6
4,324,574 - Psest_4141 0.37 +4.4
4,324,574 - Psest_4141 0.37 +3.4
4,324,903 + Psest_4141 0.64 -0.4
4,324,903 + Psest_4141 0.64 -1.5
4,324,945 + Psest_4141 0.68 +1.4
4,324,946 - Psest_4141 0.68 +1.6
4,324,946 - Psest_4141 0.68 -0.6
4,325,031 + Psest_4141 0.75 -0.2
4,325,031 + Psest_4141 0.75 -0.4
4,325,031 + Psest_4141 0.75 -2.1
4,325,031 + Psest_4141 0.75 +0.1
4,325,032 - Psest_4141 0.75 -0.2
4,325,032 - Psest_4141 0.75 +2.4
4,325,032 - Psest_4141 0.75 +5.5
4,325,056 + Psest_4141 0.77 -0.3
4,325,056 + Psest_4141 0.77 -0.3
4,325,056 + Psest_4141 0.77 +0.6
4,325,056 + Psest_4141 0.77 -0.2
4,325,056 + Psest_4141 0.77 -0.9
4,325,056 + Psest_4141 0.77 -0.2
4,325,056 + Psest_4141 0.77 +1.1
4,325,056 + Psest_4141 0.77 -0.2
4,325,057 - Psest_4141 0.77 +1.2
4,325,057 - Psest_4141 0.77 +1.9
4,325,057 - Psest_4141 0.77 +0.0
4,325,057 - Psest_4141 0.77 +3.0
4,325,057 - Psest_4141 0.77 +2.4
4,325,057 - Psest_4141 0.77 +2.7
4,325,057 - Psest_4141 0.77 +2.8
4,325,057 - Psest_4141 0.77 +2.4
4,325,057 - Psest_4141 0.77 +1.8
4,325,057 - Psest_4141 0.77 +3.0
4,325,536 - Psest_4142 0.19 -0.6
4,326,078 - Psest_4142 0.71 +0.4
4,326,173 - Psest_4142 0.80 +0.1

Or see this region's nucleotide sequence