Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0037 and Psest_0038 are separated by 79 nucleotides Psest_0038 and Psest_0039 are separated by 16 nucleotides Psest_0039 and Psest_0040 are separated by 248 nucleotides Psest_0040 and Psest_0041 are separated by 184 nucleotides
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Psest_0038: Psest_0038 - hypothetical protein, at 40,954 to 41,574
_0038
Psest_0039: Psest_0039 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 41,591 to 43,255
_0039
Psest_0040: Psest_0040 - Protein of unknown function (DUF2934)., at 43,504 to 43,701
_0040
Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367
_0041
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 40.906 kb on + strand at 40.908 kb on + strand at 40.908 kb on + strand at 40.909 kb on - strand at 40.909 kb on - strand at 40.983 kb on + strand at 40.984 kb on - strand at 40.984 kb on - strand at 41.122 kb on + strand, within Psest_0038 at 41.122 kb on + strand, within Psest_0038 at 41.123 kb on - strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.440 kb on + strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.441 kb on - strand, within Psest_0038 at 41.476 kb on + strand, within Psest_0038 at 41.477 kb on - strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.478 kb on + strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.479 kb on - strand, within Psest_0038 at 41.676 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.685 kb on + strand at 41.686 kb on - strand at 41.686 kb on - strand at 41.932 kb on - strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.237 kb on + strand, within Psest_0039 at 42.238 kb on - strand, within Psest_0039 at 42.258 kb on + strand, within Psest_0039 at 42.258 kb on + strand, within Psest_0039 at 42.505 kb on - strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.600 kb on + strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.601 kb on - strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.762 kb on + strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.763 kb on - strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.846 kb on + strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 42.847 kb on - strand, within Psest_0039 at 43.176 kb on + strand at 43.176 kb on + strand at 43.176 kb on + strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.337 kb on + strand at 43.338 kb on - strand at 43.347 kb on + strand at 43.347 kb on + strand at 43.348 kb on - strand at 43.537 kb on + strand, within Psest_0040 at 43.538 kb on - strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.621 kb on + strand, within Psest_0040 at 43.622 kb on + strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.622 kb on - strand, within Psest_0040 at 43.699 kb on + strand at 43.818 kb on + strand at 43.818 kb on + strand at 43.819 kb on - strand at 43.819 kb on - strand at 43.914 kb on + strand at 43.915 kb on - strand at 43.946 kb on + strand at 43.947 kb on - strand at 44.093 kb on + strand, within Psest_0041
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 40,906 + +2.9 40,908 + -0.8 40,908 + -1.0 40,909 - +0.2 40,909 - +0.6 40,983 + -1.5 40,984 - -0.2 40,984 - +0.2 41,122 + Psest_0038 0.27 -0.4 41,122 + Psest_0038 0.27 +0.7 41,123 - Psest_0038 0.27 -0.3 41,440 + Psest_0038 0.78 -0.5 41,440 + Psest_0038 0.78 -0.1 41,440 + Psest_0038 0.78 -0.8 41,440 + Psest_0038 0.78 +1.4 41,441 - Psest_0038 0.78 -0.3 41,441 - Psest_0038 0.78 -0.7 41,441 - Psest_0038 0.78 -1.3 41,441 - Psest_0038 0.78 -2.2 41,476 + Psest_0038 0.84 +1.9 41,477 - Psest_0038 0.84 -0.7 41,478 + Psest_0038 0.84 +0.6 41,478 + Psest_0038 0.84 +1.3 41,478 + Psest_0038 0.84 -0.2 41,478 + Psest_0038 0.84 -0.2 41,479 - Psest_0038 0.85 -2.8 41,479 - Psest_0038 0.85 +3.1 41,479 - Psest_0038 0.85 +1.7 41,479 - Psest_0038 0.85 +0.6 41,479 - Psest_0038 0.85 +0.8 41,479 - Psest_0038 0.85 +0.4 41,479 - Psest_0038 0.85 -1.0 41,676 + +0.2 41,685 + -0.2 41,685 + -2.2 41,685 + +0.4 41,686 - +0.0 41,686 - -1.2 41,932 - Psest_0039 0.20 +0.1 42,237 + Psest_0039 0.39 -0.2 42,237 + Psest_0039 0.39 -2.2 42,237 + Psest_0039 0.39 -2.2 42,238 - Psest_0039 0.39 +0.2 42,258 + Psest_0039 0.40 -1.6 42,258 + Psest_0039 0.40 +0.6 42,505 - Psest_0039 0.55 +1.4 42,600 + Psest_0039 0.61 -1.9 42,600 + Psest_0039 0.61 -0.1 42,600 + Psest_0039 0.61 -0.5 42,600 + Psest_0039 0.61 +0.5 42,600 + Psest_0039 0.61 -0.5 42,600 + Psest_0039 0.61 -1.7 42,600 + Psest_0039 0.61 -1.4 42,600 + Psest_0039 0.61 +0.6 42,600 + Psest_0039 0.61 +0.4 42,600 + Psest_0039 0.61 -0.5 42,600 + Psest_0039 0.61 -0.3 42,601 - Psest_0039 0.61 -0.3 42,601 - Psest_0039 0.61 +1.5 42,601 - Psest_0039 0.61 +0.2 42,601 - Psest_0039 0.61 +0.2 42,601 - Psest_0039 0.61 +0.2 42,762 + Psest_0039 0.70 +0.3 42,762 + Psest_0039 0.70 -0.8 42,762 + Psest_0039 0.70 -0.9 42,762 + Psest_0039 0.70 +2.4 42,762 + Psest_0039 0.70 +0.1 42,762 + Psest_0039 0.70 -0.5 42,762 + Psest_0039 0.70 +2.9 42,763 - Psest_0039 0.70 +0.5 42,763 - Psest_0039 0.70 -0.8 42,763 - Psest_0039 0.70 +1.1 42,763 - Psest_0039 0.70 +0.4 42,763 - Psest_0039 0.70 -0.1 42,763 - Psest_0039 0.70 -1.4 42,846 + Psest_0039 0.75 -1.3 42,846 + Psest_0039 0.75 +1.2 42,846 + Psest_0039 0.75 +1.5 42,847 - Psest_0039 0.75 +0.1 42,847 - Psest_0039 0.75 +0.1 42,847 - Psest_0039 0.75 +1.2 43,176 + +0.5 43,176 + +0.6 43,176 + +1.8 43,177 - +0.4 43,177 - -1.1 43,177 - -1.1 43,177 - +0.2 43,177 - -1.1 43,177 - -1.6 43,337 + -0.4 43,338 - +2.5 43,347 + -0.6 43,347 + -1.7 43,348 - +1.2 43,537 + Psest_0040 0.17 -0.4 43,538 - Psest_0040 0.17 +0.0 43,621 + Psest_0040 0.59 +0.0 43,621 + Psest_0040 0.59 -0.3 43,621 + Psest_0040 0.59 -2.0 43,621 + Psest_0040 0.59 +1.5 43,621 + Psest_0040 0.59 +1.4 43,621 + Psest_0040 0.59 +0.4 43,621 + Psest_0040 0.59 -0.1 43,621 + Psest_0040 0.59 -0.1 43,621 + Psest_0040 0.59 +0.2 43,622 + Psest_0040 0.60 -0.4 43,622 - Psest_0040 0.60 -0.3 43,622 - Psest_0040 0.60 -0.6 43,622 - Psest_0040 0.60 -0.7 43,622 - Psest_0040 0.60 +0.4 43,622 - Psest_0040 0.60 -0.5 43,622 - Psest_0040 0.60 +0.9 43,622 - Psest_0040 0.60 +0.6 43,699 + +0.2 43,818 + +0.6 43,818 + -1.2 43,819 - -0.4 43,819 - +0.1 43,914 + -1.5 43,915 - +1.2 43,946 + -0.9 43,947 - +1.0 44,093 + Psest_0041 0.14 +2.8
Or see this region's nucleotide sequence