Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2826 and Psest_2827 are separated by 184 nucleotides Psest_2827 and Psest_2828 are separated by 165 nucleotides Psest_2828 and Psest_2829 overlap by 1 nucleotides
Psest_2826: Psest_2826 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 3,014,471 to 3,015,421
_2826
Psest_2827: Psest_2827 - DNA-directed DNA polymerase III (polc), at 3,015,606 to 3,019,127
_2827
Psest_2828: Psest_2828 - Ribonuclease HII, at 3,019,293 to 3,019,931
_2828
Psest_2829: Psest_2829 - lipid-A-disaccharide synthase, at 3,019,931 to 3,021,064
_2829
Position (kb)
3015
3016
3017
3018
3019
3020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3019.168 kb on + strand at 3019.169 kb on - strand at 3019.217 kb on + strand at 3019.218 kb on - strand at 3019.250 kb on + strand at 3019.250 kb on + strand at 3019.250 kb on + strand at 3019.251 kb on - strand at 3019.251 kb on - strand at 3019.251 kb on - strand at 3019.295 kb on - strand at 3019.625 kb on + strand, within Psest_2828
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,019,168 + +1.9 3,019,169 - -1.6 3,019,217 + +0.1 3,019,218 - -0.4 3,019,250 + -0.1 3,019,250 + -1.5 3,019,250 + +1.1 3,019,251 - -1.1 3,019,251 - -0.8 3,019,251 - +1.0 3,019,295 - -1.8 3,019,625 + Psest_2828 0.52 -0.8
Or see this region's nucleotide sequence