Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2620

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2619 and Psest_2620 overlap by 11 nucleotidesPsest_2620 and Psest_2621 overlap by 7 nucleotidesPsest_2621 and Psest_2622 overlap by 1 nucleotidesPsest_2622 and Psest_2623 are separated by 11 nucleotides Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038 _2619 Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257 _2620 Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754 _2621 Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224 _2622 Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570 _2623 Position (kb) 2803 2804 2805Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.058 kb on + strand, within Psest_2619at 2802.059 kb on - strand, within Psest_2619at 2802.067 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.068 kb on - strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.617 kb on + strand, within Psest_2619at 2802.618 kb on - strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.863 kb on + strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2802.864 kb on - strand, within Psest_2619at 2803.207 kb on - strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.401 kb on + strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.402 kb on - strand, within Psest_2620at 2803.689 kb on - strand, within Psest_2620at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.401 kb on + strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.402 kb on - strand, within Psest_2621at 2804.429 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.481 kb on - strand, within Psest_2621at 2804.857 kb on + strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.858 kb on - strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.968 kb on + strand, within Psest_2622at 2804.969 kb on - strand, within Psest_2622at 2805.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,802,058 + Psest_2619 0.31 -1.3
2,802,058 + Psest_2619 0.31 +0.1
2,802,058 + Psest_2619 0.31 -0.6
2,802,059 - Psest_2619 0.31 -1.1
2,802,067 - Psest_2619 0.32 -2.3
2,802,068 - Psest_2619 0.32 -0.7
2,802,068 - Psest_2619 0.32 -0.3
2,802,068 - Psest_2619 0.32 -0.3
2,802,617 + Psest_2619 0.70 +1.0
2,802,617 + Psest_2619 0.70 -0.4
2,802,617 + Psest_2619 0.70 -1.3
2,802,618 - Psest_2619 0.70 -1.1
2,802,863 + Psest_2619 0.88 -1.3
2,802,863 + Psest_2619 0.88 +0.6
2,802,863 + Psest_2619 0.88 +0.3
2,802,864 - Psest_2619 0.88 -0.9
2,802,864 - Psest_2619 0.88 +0.1
2,802,864 - Psest_2619 0.88 +0.7
2,802,864 - Psest_2619 0.88 +0.3
2,803,207 - Psest_2620 0.15 -0.5
2,803,401 + Psest_2620 0.30 -0.4
2,803,401 + Psest_2620 0.30 -0.5
2,803,401 + Psest_2620 0.30 -1.8
2,803,401 + Psest_2620 0.30 -1.2
2,803,401 + Psest_2620 0.30 -0.3
2,803,401 + Psest_2620 0.30 +0.4
2,803,401 + Psest_2620 0.30 -0.8
2,803,401 + Psest_2620 0.30 +0.5
2,803,401 + Psest_2620 0.30 -1.0
2,803,402 - Psest_2620 0.30 -1.2
2,803,402 - Psest_2620 0.30 -0.1
2,803,402 - Psest_2620 0.30 -1.6
2,803,402 - Psest_2620 0.30 +0.6
2,803,402 - Psest_2620 0.30 -0.4
2,803,402 - Psest_2620 0.30 +0.1
2,803,402 - Psest_2620 0.30 -0.7
2,803,402 - Psest_2620 0.30 -0.5
2,803,402 - Psest_2620 0.30 +0.6
2,803,402 - Psest_2620 0.30 +0.1
2,803,402 - Psest_2620 0.30 -0.5
2,803,402 - Psest_2620 0.30 -0.1
2,803,402 - Psest_2620 0.30 -1.3
2,803,402 - Psest_2620 0.30 -0.8
2,803,402 - Psest_2620 0.30 -0.2
2,803,402 - Psest_2620 0.30 -2.4
2,803,402 - Psest_2620 0.30 -0.9
2,803,689 - Psest_2620 0.54 +0.2
2,804,401 + Psest_2621 0.30 -1.4
2,804,401 + Psest_2621 0.30 +0.8
2,804,401 + Psest_2621 0.30 -1.1
2,804,401 + Psest_2621 0.30 +3.4
2,804,401 + Psest_2621 0.30 +0.4
2,804,402 - Psest_2621 0.30 -1.2
2,804,402 - Psest_2621 0.30 +1.4
2,804,402 - Psest_2621 0.30 +0.9
2,804,402 - Psest_2621 0.30 -0.9
2,804,429 - Psest_2621 0.35 +1.8
2,804,481 - Psest_2621 0.46 +2.0
2,804,481 - Psest_2621 0.46 +0.5
2,804,857 + Psest_2622 0.22 +0.3
2,804,858 - Psest_2622 0.22 +0.3
2,804,858 - Psest_2622 0.22 +0.2
2,804,968 + Psest_2622 0.45 +2.2
2,804,968 + Psest_2622 0.45 -1.3
2,804,968 + Psest_2622 0.45 -1.6
2,804,969 - Psest_2622 0.46 -0.2
2,805,250 + -0.3

Or see this region's nucleotide sequence