Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2418 and Psest_2419 are separated by 7 nucleotides Psest_2419 and Psest_2420 are separated by 45 nucleotides
Psest_2418: Psest_2418 - diguanylate cyclase (GGDEF) domain, at 2,580,774 to 2,581,688
_2418
Psest_2419: Psest_2419 - AraC-type DNA-binding domain-containing proteins, at 2,581,696 to 2,582,733
_2419
Psest_2420: Psest_2420 - Transcriptional regulator, at 2,582,779 to 2,583,666
_2420
Position (kb)
2581
2582
2583 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2581.408 kb on + strand, within Psest_2418 at 2581.717 kb on + strand at 2581.831 kb on + strand, within Psest_2419 at 2581.831 kb on + strand, within Psest_2419 at 2581.832 kb on - strand, within Psest_2419 at 2581.832 kb on - strand, within Psest_2419 at 2582.099 kb on - strand, within Psest_2419 at 2582.099 kb on - strand, within Psest_2419 at 2582.099 kb on - strand, within Psest_2419 at 2582.252 kb on - strand, within Psest_2419 at 2582.321 kb on - strand, within Psest_2419 at 2582.435 kb on - strand, within Psest_2419 at 2582.435 kb on - strand, within Psest_2419 at 2582.435 kb on - strand, within Psest_2419 at 2582.435 kb on - strand, within Psest_2419 at 2582.441 kb on - strand, within Psest_2419 at 2582.590 kb on + strand, within Psest_2419 at 2582.591 kb on - strand, within Psest_2419 at 2582.596 kb on + strand, within Psest_2419 at 2582.596 kb on + strand, within Psest_2419 at 2582.743 kb on - strand at 2582.743 kb on - strand at 2582.743 kb on - strand at 2582.760 kb on - strand at 2583.214 kb on + strand, within Psest_2420 at 2583.215 kb on - strand, within Psest_2420 at 2583.215 kb on - strand, within Psest_2420 at 2583.351 kb on - strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.449 kb on + strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.450 kb on - strand, within Psest_2420 at 2583.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 2,581,408 + Psest_2418 0.69 +0.9 2,581,717 + -1.1 2,581,831 + Psest_2419 0.13 -0.8 2,581,831 + Psest_2419 0.13 -1.7 2,581,832 - Psest_2419 0.13 +1.6 2,581,832 - Psest_2419 0.13 +1.0 2,582,099 - Psest_2419 0.39 +2.2 2,582,099 - Psest_2419 0.39 +0.3 2,582,099 - Psest_2419 0.39 +4.2 2,582,252 - Psest_2419 0.54 +2.5 2,582,321 - Psest_2419 0.60 -0.2 2,582,435 - Psest_2419 0.71 +0.2 2,582,435 - Psest_2419 0.71 +0.1 2,582,435 - Psest_2419 0.71 +2.0 2,582,435 - Psest_2419 0.71 -0.2 2,582,441 - Psest_2419 0.72 -0.3 2,582,590 + Psest_2419 0.86 +2.5 2,582,591 - Psest_2419 0.86 +0.9 2,582,596 + Psest_2419 0.87 -0.9 2,582,596 + Psest_2419 0.87 -1.1 2,582,743 - +0.2 2,582,743 - -0.2 2,582,743 - -1.2 2,582,760 - +2.6 2,583,214 + Psest_2420 0.49 +2.7 2,583,215 - Psest_2420 0.49 -2.0 2,583,215 - Psest_2420 0.49 -1.8 2,583,351 - Psest_2420 0.64 -0.5 2,583,449 + Psest_2420 0.75 +1.0 2,583,449 + Psest_2420 0.75 +1.4 2,583,449 + Psest_2420 0.75 -1.0 2,583,449 + Psest_2420 0.75 +0.6 2,583,450 - Psest_2420 0.76 -0.1 2,583,450 - Psest_2420 0.76 -0.4 2,583,450 - Psest_2420 0.76 +2.3 2,583,450 - Psest_2420 0.76 +0.4 2,583,450 - Psest_2420 0.76 +0.1 2,583,450 - Psest_2420 0.76 -1.7 2,583,450 - Psest_2420 0.76 -1.1 2,583,709 - -0.1
Or see this region's nucleotide sequence