Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2419

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2418 and Psest_2419 are separated by 7 nucleotidesPsest_2419 and Psest_2420 are separated by 45 nucleotides Psest_2418: Psest_2418 - diguanylate cyclase (GGDEF) domain, at 2,580,774 to 2,581,688 _2418 Psest_2419: Psest_2419 - AraC-type DNA-binding domain-containing proteins, at 2,581,696 to 2,582,733 _2419 Psest_2420: Psest_2420 - Transcriptional regulator, at 2,582,779 to 2,583,666 _2420 Position (kb) 2581 2582 2583Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2581.408 kb on + strand, within Psest_2418at 2581.717 kb on + strandat 2581.831 kb on + strand, within Psest_2419at 2581.831 kb on + strand, within Psest_2419at 2581.832 kb on - strand, within Psest_2419at 2581.832 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.099 kb on - strand, within Psest_2419at 2582.252 kb on - strand, within Psest_2419at 2582.321 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.435 kb on - strand, within Psest_2419at 2582.441 kb on - strand, within Psest_2419at 2582.590 kb on + strand, within Psest_2419at 2582.591 kb on - strand, within Psest_2419at 2582.596 kb on + strand, within Psest_2419at 2582.596 kb on + strand, within Psest_2419at 2582.743 kb on - strandat 2582.743 kb on - strandat 2582.743 kb on - strandat 2582.760 kb on - strandat 2583.214 kb on + strand, within Psest_2420at 2583.215 kb on - strand, within Psest_2420at 2583.215 kb on - strand, within Psest_2420at 2583.351 kb on - strand, within Psest_2420at 2583.449 kb on + strand, within Psest_2420at 2583.449 kb on + strand, within Psest_2420at 2583.449 kb on + strand, within Psest_2420at 2583.449 kb on + strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.450 kb on - strand, within Psest_2420at 2583.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,581,408 + Psest_2418 0.69 +0.9
2,581,717 + -1.1
2,581,831 + Psest_2419 0.13 -0.8
2,581,831 + Psest_2419 0.13 -1.7
2,581,832 - Psest_2419 0.13 +1.6
2,581,832 - Psest_2419 0.13 +1.0
2,582,099 - Psest_2419 0.39 +2.2
2,582,099 - Psest_2419 0.39 +0.3
2,582,099 - Psest_2419 0.39 +4.2
2,582,252 - Psest_2419 0.54 +2.5
2,582,321 - Psest_2419 0.60 -0.2
2,582,435 - Psest_2419 0.71 +0.2
2,582,435 - Psest_2419 0.71 +0.1
2,582,435 - Psest_2419 0.71 +2.0
2,582,435 - Psest_2419 0.71 -0.2
2,582,441 - Psest_2419 0.72 -0.3
2,582,590 + Psest_2419 0.86 +2.5
2,582,591 - Psest_2419 0.86 +0.9
2,582,596 + Psest_2419 0.87 -0.9
2,582,596 + Psest_2419 0.87 -1.1
2,582,743 - +0.2
2,582,743 - -0.2
2,582,743 - -1.2
2,582,760 - +2.6
2,583,214 + Psest_2420 0.49 +2.7
2,583,215 - Psest_2420 0.49 -2.0
2,583,215 - Psest_2420 0.49 -1.8
2,583,351 - Psest_2420 0.64 -0.5
2,583,449 + Psest_2420 0.75 +1.0
2,583,449 + Psest_2420 0.75 +1.4
2,583,449 + Psest_2420 0.75 -1.0
2,583,449 + Psest_2420 0.75 +0.6
2,583,450 - Psest_2420 0.76 -0.1
2,583,450 - Psest_2420 0.76 -0.4
2,583,450 - Psest_2420 0.76 +2.3
2,583,450 - Psest_2420 0.76 +0.4
2,583,450 - Psest_2420 0.76 +0.1
2,583,450 - Psest_2420 0.76 -1.7
2,583,450 - Psest_2420 0.76 -1.1
2,583,709 - -0.1

Or see this region's nucleotide sequence