Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1162

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1160 and Psest_1161 are separated by 1 nucleotidesPsest_1161 and Psest_1162 are separated by 14 nucleotidesPsest_1162 and Psest_1163 are separated by 125 nucleotides Psest_1160: Psest_1160 - Uncharacterized conserved protein, at 1,261,184 to 1,261,756 _1160 Psest_1161: Psest_1161 - E3 Ubiquitin ligase., at 1,261,758 to 1,262,651 _1161 Psest_1162: Psest_1162 - Spermidine synthase, at 1,262,666 to 1,263,349 _1162 Psest_1163: Psest_1163 - diguanylate cyclase (GGDEF) domain, at 1,263,475 to 1,265,535 _1163 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -1 0 1 2at 1261.899 kb on + strand, within Psest_1161at 1261.900 kb on - strand, within Psest_1161at 1261.900 kb on - strand, within Psest_1161at 1262.260 kb on - strand, within Psest_1161at 1262.636 kb on + strandat 1262.636 kb on + strandat 1263.078 kb on - strand, within Psest_1162at 1263.078 kb on - strand, within Psest_1162at 1263.156 kb on - strand, within Psest_1162at 1263.336 kb on - strandat 1263.336 kb on - strandat 1263.336 kb on - strandat 1263.448 kb on - strandat 1264.212 kb on - strand, within Psest_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,261,899 + Psest_1161 0.16 +0.8
1,261,900 - Psest_1161 0.16 +0.0
1,261,900 - Psest_1161 0.16 -0.3
1,262,260 - Psest_1161 0.56 +0.3
1,262,636 + -1.2
1,262,636 + +0.6
1,263,078 - Psest_1162 0.60 +1.8
1,263,078 - Psest_1162 0.60 -0.8
1,263,156 - Psest_1162 0.72 +0.9
1,263,336 - -1.0
1,263,336 - +0.4
1,263,336 - -0.4
1,263,448 - -0.2
1,264,212 - Psest_1163 0.36 +0.1

Or see this region's nucleotide sequence