Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1139

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1137 and Psest_1138 overlap by 8 nucleotidesPsest_1138 and Psest_1139 are separated by 19 nucleotidesPsest_1139 and Psest_1140 are separated by 45 nucleotidesPsest_1140 and Psest_1141 are separated by 4 nucleotides Psest_1137: Psest_1137 - hypothetical protein, at 1,234,405 to 1,235,433 _1137 Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016 _1138 Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051 _1139 Psest_1140: Psest_1140 - 2-dehydropantoate 2-reductase, at 1,238,097 to 1,239,008 _1140 Psest_1141: Psest_1141 - diguanylate cyclase (GGDEF) domain, at 1,239,013 to 1,239,978 _1141 Position (kb) 1236 1237 1238 1239Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1235.074 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.223 kb on - strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.870 kb on + strand, within Psest_1138at 1236.022 kb on - strandat 1236.022 kb on - strandat 1236.025 kb on - strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.155 kb on - strandat 1236.495 kb on + strand, within Psest_1139at 1236.938 kb on - strand, within Psest_1139at 1237.129 kb on + strand, within Psest_1139at 1237.130 kb on - strand, within Psest_1139at 1237.130 kb on - strand, within Psest_1139at 1237.189 kb on + strand, within Psest_1139at 1237.432 kb on + strand, within Psest_1139at 1237.433 kb on - strand, within Psest_1139at 1237.579 kb on + strand, within Psest_1139at 1237.579 kb on + strand, within Psest_1139at 1237.579 kb on + strand, within Psest_1139at 1237.579 kb on + strand, within Psest_1139at 1237.580 kb on - strand, within Psest_1139at 1237.580 kb on - strand, within Psest_1139at 1237.580 kb on - strand, within Psest_1139at 1237.580 kb on - strand, within Psest_1139at 1237.580 kb on - strand, within Psest_1139at 1237.771 kb on + strand, within Psest_1139at 1237.772 kb on - strand, within Psest_1139at 1237.772 kb on - strand, within Psest_1139at 1237.798 kb on + strand, within Psest_1139at 1238.066 kb on + strandat 1238.066 kb on + strandat 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.254 kb on + strand, within Psest_1140at 1238.255 kb on - strand, within Psest_1140at 1238.266 kb on + strand, within Psest_1140at 1238.266 kb on + strand, within Psest_1140at 1238.267 kb on - strand, within Psest_1140at 1238.267 kb on - strand, within Psest_1140at 1238.422 kb on + strand, within Psest_1140at 1238.423 kb on - strand, within Psest_1140at 1238.423 kb on - strand, within Psest_1140at 1238.503 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.773 kb on + strand, within Psest_1140at 1238.774 kb on - strand, within Psest_1140at 1238.774 kb on - strand, within Psest_1140

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,235,074 + Psest_1137 0.65 +0.4
1,235,108 + Psest_1137 0.68 +1.3
1,235,108 + Psest_1137 0.68 -0.1
1,235,109 - Psest_1137 0.68 +1.6
1,235,109 - Psest_1137 0.68 +1.8
1,235,109 - Psest_1137 0.68 -0.4
1,235,129 + Psest_1137 0.70 -1.7
1,235,129 + Psest_1137 0.70 +0.1
1,235,129 + Psest_1137 0.70 +0.4
1,235,129 + Psest_1137 0.70 +0.3
1,235,129 + Psest_1137 0.70 -0.1
1,235,129 + Psest_1137 0.70 +0.2
1,235,129 + Psest_1137 0.70 -0.5
1,235,129 + Psest_1137 0.70 +0.5
1,235,129 + Psest_1137 0.70 -1.6
1,235,129 + Psest_1137 0.70 -0.8
1,235,129 + Psest_1137 0.70 -1.4
1,235,129 + Psest_1137 0.70 -0.7
1,235,129 + Psest_1137 0.70 +1.0
1,235,129 + Psest_1137 0.70 -0.5
1,235,130 - Psest_1137 0.70 -0.1
1,235,130 - Psest_1137 0.70 -0.5
1,235,132 + Psest_1137 0.71 +0.4
1,235,132 + Psest_1137 0.71 +5.1
1,235,132 + Psest_1137 0.71 -1.4
1,235,132 + Psest_1137 0.71 -0.3
1,235,222 + Psest_1137 0.79 -0.5
1,235,222 + Psest_1137 0.79 -1.5
1,235,223 - Psest_1137 0.79 -0.5
1,235,292 + Psest_1137 0.86 -0.0
1,235,292 + Psest_1137 0.86 -2.1
1,235,314 + Psest_1137 0.88 -0.1
1,235,314 + Psest_1137 0.88 -0.6
1,235,315 - Psest_1137 0.88 +0.4
1,235,315 - Psest_1137 0.88 -1.9
1,235,870 + Psest_1138 0.75 -0.5
1,236,022 - -0.9
1,236,022 - +0.8
1,236,025 - +0.3
1,236,154 + -0.4
1,236,154 + +0.1
1,236,154 + +0.7
1,236,155 - -1.6
1,236,495 + Psest_1139 0.23 +0.7
1,236,938 - Psest_1139 0.45 -0.4
1,237,129 + Psest_1139 0.54 +1.2
1,237,130 - Psest_1139 0.54 +4.1
1,237,130 - Psest_1139 0.54 +0.1
1,237,189 + Psest_1139 0.57 +1.0
1,237,432 + Psest_1139 0.69 -1.0
1,237,433 - Psest_1139 0.69 +1.1
1,237,579 + Psest_1139 0.77 +7.5
1,237,579 + Psest_1139 0.77 -0.3
1,237,579 + Psest_1139 0.77 -0.4
1,237,579 + Psest_1139 0.77 +0.1
1,237,580 - Psest_1139 0.77 +0.1
1,237,580 - Psest_1139 0.77 -1.0
1,237,580 - Psest_1139 0.77 +1.0
1,237,580 - Psest_1139 0.77 -0.1
1,237,580 - Psest_1139 0.77 +0.9
1,237,771 + Psest_1139 0.86 -0.8
1,237,772 - Psest_1139 0.86 -0.3
1,237,772 - Psest_1139 0.86 -1.4
1,237,798 + Psest_1139 0.87 -0.1
1,238,066 + -0.1
1,238,066 + +0.4
1,238,254 + Psest_1140 0.17 +0.2
1,238,254 + Psest_1140 0.17 -0.9
1,238,254 + Psest_1140 0.17 -0.5
1,238,254 + Psest_1140 0.17 -0.9
1,238,254 + Psest_1140 0.17 -0.0
1,238,254 + Psest_1140 0.17 +0.5
1,238,254 + Psest_1140 0.17 +0.1
1,238,255 - Psest_1140 0.17 -0.7
1,238,266 + Psest_1140 0.19 +0.4
1,238,266 + Psest_1140 0.19 -1.3
1,238,267 - Psest_1140 0.19 -0.9
1,238,267 - Psest_1140 0.19 +1.4
1,238,422 + Psest_1140 0.36 -0.1
1,238,423 - Psest_1140 0.36 +0.1
1,238,423 - Psest_1140 0.36 -0.1
1,238,503 + Psest_1140 0.45 +0.2
1,238,773 + Psest_1140 0.74 -0.4
1,238,773 + Psest_1140 0.74 -0.4
1,238,773 + Psest_1140 0.74 +0.2
1,238,774 - Psest_1140 0.74 -1.8
1,238,774 - Psest_1140 0.74 +1.9

Or see this region's nucleotide sequence