Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1099

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1098 and Psest_1099 are separated by 5 nucleotidesPsest_1099 and Psest_1100 are separated by 15 nucleotides Psest_1098: Psest_1098 - Restriction endonuclease S subunits, at 1,190,460 to 1,192,118 _1098 Psest_1099: Psest_1099 - Type I restriction-modification system methyltransferase subunit, at 1,192,124 to 1,193,788 _1099 Psest_1100: Psest_1100 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 1,193,804 to 1,196,602 _1100 Position (kb) 1192 1193 1194Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1191.249 kb on + strand, within Psest_1098at 1191.270 kb on - strand, within Psest_1098at 1191.273 kb on + strand, within Psest_1098at 1191.273 kb on + strand, within Psest_1098at 1191.273 kb on + strand, within Psest_1098at 1191.273 kb on + strand, within Psest_1098at 1191.274 kb on - strand, within Psest_1098at 1191.277 kb on + strand, within Psest_1098at 1191.277 kb on + strand, within Psest_1098at 1191.277 kb on + strand, within Psest_1098at 1191.278 kb on - strand, within Psest_1098at 1191.278 kb on - strand, within Psest_1098at 1191.301 kb on + strand, within Psest_1098at 1191.301 kb on + strand, within Psest_1098at 1191.302 kb on - strand, within Psest_1098at 1191.305 kb on + strand, within Psest_1098at 1191.305 kb on + strand, within Psest_1098at 1191.306 kb on - strand, within Psest_1098at 1191.306 kb on - strand, within Psest_1098at 1191.306 kb on - strand, within Psest_1098at 1191.428 kb on + strand, within Psest_1098at 1191.462 kb on - strand, within Psest_1098at 1191.790 kb on + strand, within Psest_1098at 1191.790 kb on + strand, within Psest_1098at 1191.865 kb on + strand, within Psest_1098at 1191.866 kb on - strand, within Psest_1098at 1191.866 kb on - strand, within Psest_1098at 1191.866 kb on - strand, within Psest_1098at 1191.866 kb on - strand, within Psest_1098at 1192.151 kb on + strandat 1192.199 kb on + strandat 1192.199 kb on + strandat 1192.199 kb on + strandat 1192.200 kb on - strandat 1192.200 kb on - strandat 1192.200 kb on - strandat 1192.298 kb on + strand, within Psest_1099at 1192.299 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.306 kb on - strand, within Psest_1099at 1192.345 kb on + strand, within Psest_1099at 1192.345 kb on + strand, within Psest_1099at 1192.345 kb on + strand, within Psest_1099at 1192.346 kb on - strand, within Psest_1099at 1192.395 kb on + strand, within Psest_1099at 1192.396 kb on - strand, within Psest_1099at 1192.396 kb on - strand, within Psest_1099at 1192.525 kb on + strand, within Psest_1099at 1192.526 kb on - strand, within Psest_1099at 1192.526 kb on - strand, within Psest_1099at 1192.526 kb on - strand, within Psest_1099at 1192.575 kb on + strand, within Psest_1099at 1192.575 kb on + strand, within Psest_1099at 1192.576 kb on - strand, within Psest_1099at 1192.576 kb on - strand, within Psest_1099at 1192.731 kb on + strand, within Psest_1099at 1192.731 kb on + strand, within Psest_1099at 1192.732 kb on - strand, within Psest_1099at 1192.769 kb on - strand, within Psest_1099at 1192.845 kb on + strand, within Psest_1099at 1192.863 kb on + strand, within Psest_1099at 1192.863 kb on + strand, within Psest_1099at 1192.864 kb on - strand, within Psest_1099at 1192.888 kb on - strand, within Psest_1099at 1192.958 kb on + strand, within Psest_1099at 1192.958 kb on + strand, within Psest_1099at 1192.958 kb on + strand, within Psest_1099at 1192.958 kb on + strand, within Psest_1099at 1192.958 kb on + strand, within Psest_1099at 1192.959 kb on - strand, within Psest_1099at 1192.959 kb on - strand, within Psest_1099at 1192.959 kb on - strand, within Psest_1099at 1192.971 kb on + strand, within Psest_1099at 1193.100 kb on + strand, within Psest_1099at 1193.100 kb on + strand, within Psest_1099at 1193.100 kb on + strand, within Psest_1099at 1193.100 kb on + strand, within Psest_1099at 1193.101 kb on - strand, within Psest_1099at 1193.101 kb on - strand, within Psest_1099at 1193.107 kb on - strand, within Psest_1099at 1193.162 kb on + strand, within Psest_1099at 1193.162 kb on + strand, within Psest_1099at 1193.163 kb on - strand, within Psest_1099at 1193.519 kb on + strand, within Psest_1099at 1193.519 kb on + strand, within Psest_1099at 1193.519 kb on + strand, within Psest_1099at 1193.520 kb on - strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.607 kb on + strand, within Psest_1099at 1193.608 kb on - strand, within Psest_1099at 1193.608 kb on - strand, within Psest_1099at 1193.608 kb on - strand, within Psest_1099at 1193.608 kb on - strand, within Psest_1099at 1193.682 kb on + strandat 1193.682 kb on + strandat 1193.682 kb on + strandat 1193.683 kb on - strandat 1193.801 kb on + strandat 1193.801 kb on + strandat 1193.801 kb on + strandat 1193.801 kb on + strandat 1193.801 kb on + strandat 1193.802 kb on - strandat 1193.805 kb on + strandat 1193.805 kb on + strandat 1193.806 kb on - strandat 1194.338 kb on + strand, within Psest_1100at 1194.338 kb on + strand, within Psest_1100at 1194.338 kb on + strand, within Psest_1100at 1194.338 kb on + strand, within Psest_1100at 1194.338 kb on + strand, within Psest_1100at 1194.339 kb on - strand, within Psest_1100at 1194.339 kb on - strand, within Psest_1100at 1194.588 kb on - strand, within Psest_1100at 1194.600 kb on + strand, within Psest_1100

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,191,249 + Psest_1098 0.48 +2.1
1,191,270 - Psest_1098 0.49 +0.3
1,191,273 + Psest_1098 0.49 -0.1
1,191,273 + Psest_1098 0.49 +1.5
1,191,273 + Psest_1098 0.49 +1.9
1,191,273 + Psest_1098 0.49 +0.1
1,191,274 - Psest_1098 0.49 +1.5
1,191,277 + Psest_1098 0.49 -0.3
1,191,277 + Psest_1098 0.49 +1.6
1,191,277 + Psest_1098 0.49 +0.9
1,191,278 - Psest_1098 0.49 -1.1
1,191,278 - Psest_1098 0.49 +2.5
1,191,301 + Psest_1098 0.51 -0.4
1,191,301 + Psest_1098 0.51 -0.0
1,191,302 - Psest_1098 0.51 +1.7
1,191,305 + Psest_1098 0.51 +3.1
1,191,305 + Psest_1098 0.51 +1.3
1,191,306 - Psest_1098 0.51 +1.7
1,191,306 - Psest_1098 0.51 +0.4
1,191,306 - Psest_1098 0.51 +0.1
1,191,428 + Psest_1098 0.58 +1.9
1,191,462 - Psest_1098 0.60 +5.3
1,191,790 + Psest_1098 0.80 -0.7
1,191,790 + Psest_1098 0.80 +2.4
1,191,865 + Psest_1098 0.85 +0.4
1,191,866 - Psest_1098 0.85 +0.0
1,191,866 - Psest_1098 0.85 -0.2
1,191,866 - Psest_1098 0.85 +1.6
1,191,866 - Psest_1098 0.85 +0.9
1,192,151 + +0.3
1,192,199 + +2.2
1,192,199 + +3.0
1,192,199 + +0.9
1,192,200 - +2.0
1,192,200 - +3.2
1,192,200 - -0.3
1,192,298 + Psest_1099 0.10 -0.4
1,192,299 - Psest_1099 0.11 +0.3
1,192,306 - Psest_1099 0.11 +1.5
1,192,306 - Psest_1099 0.11 +0.6
1,192,306 - Psest_1099 0.11 +2.7
1,192,306 - Psest_1099 0.11 -0.7
1,192,306 - Psest_1099 0.11 +1.6
1,192,306 - Psest_1099 0.11 +1.6
1,192,306 - Psest_1099 0.11 +0.7
1,192,345 + Psest_1099 0.13 +2.1
1,192,345 + Psest_1099 0.13 +4.7
1,192,345 + Psest_1099 0.13 +0.6
1,192,346 - Psest_1099 0.13 +1.4
1,192,395 + Psest_1099 0.16 -0.1
1,192,396 - Psest_1099 0.16 +2.1
1,192,396 - Psest_1099 0.16 +4.5
1,192,525 + Psest_1099 0.24 +2.0
1,192,526 - Psest_1099 0.24 +2.1
1,192,526 - Psest_1099 0.24 +1.4
1,192,526 - Psest_1099 0.24 +1.5
1,192,575 + Psest_1099 0.27 +0.5
1,192,575 + Psest_1099 0.27 +2.1
1,192,576 - Psest_1099 0.27 +2.1
1,192,576 - Psest_1099 0.27 +1.2
1,192,731 + Psest_1099 0.36 +1.0
1,192,731 + Psest_1099 0.36 +2.5
1,192,732 - Psest_1099 0.37 +4.0
1,192,769 - Psest_1099 0.39 -0.4
1,192,845 + Psest_1099 0.43 +0.3
1,192,863 + Psest_1099 0.44 +0.1
1,192,863 + Psest_1099 0.44 +0.8
1,192,864 - Psest_1099 0.44 +0.4
1,192,888 - Psest_1099 0.46 +0.2
1,192,958 + Psest_1099 0.50 +0.6
1,192,958 + Psest_1099 0.50 +1.4
1,192,958 + Psest_1099 0.50 +1.0
1,192,958 + Psest_1099 0.50 +1.2
1,192,958 + Psest_1099 0.50 +0.6
1,192,959 - Psest_1099 0.50 +1.1
1,192,959 - Psest_1099 0.50 +1.8
1,192,959 - Psest_1099 0.50 +1.2
1,192,971 + Psest_1099 0.51 +0.8
1,193,100 + Psest_1099 0.59 -0.2
1,193,100 + Psest_1099 0.59 +1.9
1,193,100 + Psest_1099 0.59 +0.7
1,193,100 + Psest_1099 0.59 +1.9
1,193,101 - Psest_1099 0.59 +0.6
1,193,101 - Psest_1099 0.59 +2.5
1,193,107 - Psest_1099 0.59 +0.0
1,193,162 + Psest_1099 0.62 +4.0
1,193,162 + Psest_1099 0.62 +1.4
1,193,163 - Psest_1099 0.62 +0.1
1,193,519 + Psest_1099 0.84 +0.9
1,193,519 + Psest_1099 0.84 +0.9
1,193,519 + Psest_1099 0.84 -0.6
1,193,520 - Psest_1099 0.84 +0.8
1,193,607 + Psest_1099 0.89 -0.6
1,193,607 + Psest_1099 0.89 -0.3
1,193,607 + Psest_1099 0.89 +2.3
1,193,607 + Psest_1099 0.89 +0.6
1,193,607 + Psest_1099 0.89 +1.3
1,193,607 + Psest_1099 0.89 +0.3
1,193,607 + Psest_1099 0.89 +3.0
1,193,607 + Psest_1099 0.89 +0.4
1,193,607 + Psest_1099 0.89 +1.2
1,193,607 + Psest_1099 0.89 +0.3
1,193,608 - Psest_1099 0.89 -1.8
1,193,608 - Psest_1099 0.89 +0.1
1,193,608 - Psest_1099 0.89 +0.3
1,193,608 - Psest_1099 0.89 +0.4
1,193,682 + -0.6
1,193,682 + +0.3
1,193,682 + +1.4
1,193,683 - +0.2
1,193,801 + +0.4
1,193,801 + -0.8
1,193,801 + +0.4
1,193,801 + +4.2
1,193,801 + +0.3
1,193,802 - -0.3
1,193,805 + +0.3
1,193,805 + +1.3
1,193,806 - -0.7
1,194,338 + Psest_1100 0.19 -0.9
1,194,338 + Psest_1100 0.19 +0.1
1,194,338 + Psest_1100 0.19 -1.4
1,194,338 + Psest_1100 0.19 -0.1
1,194,338 + Psest_1100 0.19 -0.9
1,194,339 - Psest_1100 0.19 -0.7
1,194,339 - Psest_1100 0.19 -0.7
1,194,588 - Psest_1100 0.28 +1.6
1,194,600 + Psest_1100 0.28 +0.4

Or see this region's nucleotide sequence