Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0424

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0423 and Psest_0424 overlap by 8 nucleotides Psest_0423: Psest_0423 - hypothetical protein, at 459,051 to 461,111 _0423 Psest_0424: Psest_0424 - Phage integrase family., at 461,104 to 462,975 _0424 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 460.128 kb on + strand, within Psest_0423at 460.131 kb on + strand, within Psest_0423at 460.132 kb on - strand, within Psest_0423at 460.149 kb on - strand, within Psest_0423at 460.189 kb on + strand, within Psest_0423at 460.320 kb on - strand, within Psest_0423at 460.349 kb on + strand, within Psest_0423at 460.419 kb on - strand, within Psest_0423at 460.539 kb on + strand, within Psest_0423at 460.540 kb on - strand, within Psest_0423at 460.543 kb on + strand, within Psest_0423at 460.543 kb on + strand, within Psest_0423at 460.543 kb on + strand, within Psest_0423at 460.563 kb on + strand, within Psest_0423at 460.563 kb on + strand, within Psest_0423at 460.564 kb on - strand, within Psest_0423at 460.740 kb on - strand, within Psest_0423at 460.822 kb on + strand, within Psest_0423at 460.822 kb on + strand, within Psest_0423at 460.822 kb on + strand, within Psest_0423at 460.822 kb on + strand, within Psest_0423at 460.823 kb on - strand, within Psest_0423at 460.823 kb on - strand, within Psest_0423at 460.823 kb on - strand, within Psest_0423at 460.823 kb on - strand, within Psest_0423at 460.832 kb on + strand, within Psest_0423at 460.871 kb on - strand, within Psest_0423at 460.941 kb on - strandat 460.998 kb on + strandat 461.448 kb on + strand, within Psest_0424at 461.598 kb on + strand, within Psest_0424at 461.613 kb on + strand, within Psest_0424at 461.664 kb on + strand, within Psest_0424at 461.679 kb on + strand, within Psest_0424at 461.744 kb on + strand, within Psest_0424at 461.823 kb on - strand, within Psest_0424at 461.869 kb on + strand, within Psest_0424at 461.870 kb on - strand, within Psest_0424at 461.919 kb on + strand, within Psest_0424at 461.963 kb on - strand, within Psest_0424at 461.987 kb on + strand, within Psest_0424at 462.075 kb on + strand, within Psest_0424at 462.075 kb on + strand, within Psest_0424at 462.261 kb on + strand, within Psest_0424at 462.262 kb on - strand, within Psest_0424at 462.432 kb on + strand, within Psest_0424at 462.600 kb on + strand, within Psest_0424at 462.636 kb on + strand, within Psest_0424at 462.636 kb on + strand, within Psest_0424at 462.648 kb on + strand, within Psest_0424at 462.648 kb on + strand, within Psest_0424at 462.669 kb on + strand, within Psest_0424at 462.692 kb on + strand, within Psest_0424at 462.692 kb on + strand, within Psest_0424at 462.735 kb on + strand, within Psest_0424at 462.825 kb on + strandat 462.850 kb on - strandat 463.103 kb on + strandat 463.103 kb on + strandat 463.195 kb on + strandat 463.340 kb on + strandat 463.340 kb on + strandat 463.361 kb on + strandat 463.361 kb on + strandat 463.363 kb on + strandat 463.453 kb on + strandat 463.497 kb on + strandat 463.570 kb on + strandat 463.570 kb on + strandat 463.570 kb on + strandat 463.746 kb on + strandat 463.796 kb on + strandat 463.797 kb on - strandat 463.836 kb on + strandat 463.852 kb on + strandat 463.852 kb on + strandat 463.853 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.867 kb on - strandat 463.871 kb on - strandat 463.871 kb on - strandat 463.871 kb on - strandat 463.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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460,128 + Psest_0423 0.52 +0.2
460,131 + Psest_0423 0.52 +2.2
460,132 - Psest_0423 0.52 +2.3
460,149 - Psest_0423 0.53 +1.0
460,189 + Psest_0423 0.55 +3.6
460,320 - Psest_0423 0.62 +0.2
460,349 + Psest_0423 0.63 -1.9
460,419 - Psest_0423 0.66 -0.6
460,539 + Psest_0423 0.72 -1.5
460,540 - Psest_0423 0.72 +1.1
460,543 + Psest_0423 0.72 +0.1
460,543 + Psest_0423 0.72 -0.9
460,543 + Psest_0423 0.72 +1.0
460,563 + Psest_0423 0.73 -1.2
460,563 + Psest_0423 0.73 +1.0
460,564 - Psest_0423 0.73 +0.8
460,740 - Psest_0423 0.82 -2.0
460,822 + Psest_0423 0.86 +0.8
460,822 + Psest_0423 0.86 +0.9
460,822 + Psest_0423 0.86 -1.2
460,822 + Psest_0423 0.86 -0.2
460,823 - Psest_0423 0.86 -1.0
460,823 - Psest_0423 0.86 -0.3
460,823 - Psest_0423 0.86 +1.6
460,823 - Psest_0423 0.86 -1.7
460,832 + Psest_0423 0.86 +0.8
460,871 - Psest_0423 0.88 +0.6
460,941 - -0.8
460,998 + -0.2
461,448 + Psest_0424 0.18 +0.6
461,598 + Psest_0424 0.26 +1.8
461,613 + Psest_0424 0.27 -0.1
461,664 + Psest_0424 0.30 +0.8
461,679 + Psest_0424 0.31 +0.0
461,744 + Psest_0424 0.34 +1.1
461,823 - Psest_0424 0.38 +1.4
461,869 + Psest_0424 0.41 +0.8
461,870 - Psest_0424 0.41 +0.9
461,919 + Psest_0424 0.44 +0.2
461,963 - Psest_0424 0.46 +1.3
461,987 + Psest_0424 0.47 +1.2
462,075 + Psest_0424 0.52 +0.7
462,075 + Psest_0424 0.52 -0.3
462,261 + Psest_0424 0.62 +0.5
462,262 - Psest_0424 0.62 +1.6
462,432 + Psest_0424 0.71 +1.4
462,600 + Psest_0424 0.80 -0.1
462,636 + Psest_0424 0.82 +1.2
462,636 + Psest_0424 0.82 -0.6
462,648 + Psest_0424 0.82 -0.4
462,648 + Psest_0424 0.82 -0.9
462,669 + Psest_0424 0.84 +0.2
462,692 + Psest_0424 0.85 +1.4
462,692 + Psest_0424 0.85 -1.1
462,735 + Psest_0424 0.87 +5.7
462,825 + +0.4
462,850 - +0.4
463,103 + +1.5
463,103 + -0.4
463,195 + +1.8
463,340 + +0.2
463,340 + -0.7
463,361 + +0.4
463,361 + -0.3
463,363 + -0.4
463,453 + -0.3
463,497 + +0.6
463,570 + +2.7
463,570 + -0.3
463,570 + -0.8
463,746 + +0.8
463,796 + +0.4
463,797 - -1.1
463,836 + +0.4
463,852 + -2.2
463,852 + -0.9
463,853 - +0.3
463,867 - +0.3
463,867 - +1.0
463,867 - -0.5
463,867 - +1.3
463,867 - -0.4
463,867 - -0.5
463,867 - +0.2
463,867 - +1.3
463,867 - -0.9
463,867 - +1.0
463,867 - +0.1
463,871 - +0.3
463,871 - +0.7
463,871 - -3.1
463,941 + +1.6

Or see this region's nucleotide sequence