Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0409 and Psest_0410 are separated by 71 nucleotides Psest_0410 and Psest_0411 are separated by 93 nucleotides
Psest_0409: Psest_0409 - Putative homoserine kinase type II (protein kinase fold), at 444,755 to 445,729
_0409
Psest_0410: Psest_0410 - Predicted amidophosphoribosyltransferases, at 445,801 to 446,505
_0410
Psest_0411: Psest_0411 - biotin synthetase, at 446,599 to 447,654
_0411
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 444.903 kb on + strand, within Psest_0409 at 444.903 kb on + strand, within Psest_0409 at 445.219 kb on - strand, within Psest_0409 at 445.615 kb on - strand, within Psest_0409 at 445.711 kb on + strand at 445.747 kb on - strand at 445.760 kb on + strand at 445.777 kb on + strand at 445.778 kb on - strand at 445.778 kb on - strand at 445.835 kb on + strand at 445.835 kb on + strand at 445.836 kb on - strand at 445.836 kb on - strand at 446.266 kb on - strand, within Psest_0410 at 446.318 kb on + strand, within Psest_0410 at 446.319 kb on - strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.430 kb on + strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.431 kb on - strand, within Psest_0410 at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.581 kb on + strand at 446.582 kb on - strand at 446.582 kb on - strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.585 kb on + strand at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.791 kb on + strand, within Psest_0411 at 446.792 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.813 kb on - strand, within Psest_0411 at 446.950 kb on + strand, within Psest_0411 at 446.951 kb on - strand, within Psest_0411 at 446.951 kb on - strand, within Psest_0411 at 447.062 kb on - strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.064 kb on + strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.065 kb on - strand, within Psest_0411 at 447.081 kb on + strand, within Psest_0411 at 447.094 kb on + strand, within Psest_0411 at 447.094 kb on + strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.095 kb on - strand, within Psest_0411 at 447.097 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.124 kb on + strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411 at 447.152 kb on - strand, within Psest_0411
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 444,903 + Psest_0409 0.15 +0.7 444,903 + Psest_0409 0.15 -1.0 445,219 - Psest_0409 0.48 -1.9 445,615 - Psest_0409 0.88 +1.1 445,711 + -1.4 445,747 - +0.3 445,760 + +0.8 445,777 + +0.1 445,778 - -1.7 445,778 - -0.0 445,835 + -0.8 445,835 + -0.4 445,836 - +1.2 445,836 - +0.7 446,266 - Psest_0410 0.66 +1.9 446,318 + Psest_0410 0.73 +0.2 446,319 - Psest_0410 0.73 +0.4 446,430 + Psest_0410 0.89 +0.2 446,430 + Psest_0410 0.89 -1.1 446,431 - Psest_0410 0.89 +2.8 446,431 - Psest_0410 0.89 +1.3 446,431 - Psest_0410 0.89 +0.0 446,431 - Psest_0410 0.89 -0.3 446,431 - Psest_0410 0.89 +1.1 446,581 + +1.5 446,581 + -1.2 446,581 + +0.0 446,581 + -2.1 446,582 - +0.3 446,582 - -1.0 446,585 + +2.2 446,585 + -0.9 446,585 + -0.1 446,585 + +3.8 446,791 + Psest_0411 0.18 -2.0 446,791 + Psest_0411 0.18 +0.8 446,791 + Psest_0411 0.18 -3.1 446,791 + Psest_0411 0.18 +1.0 446,791 + Psest_0411 0.18 -2.3 446,791 + Psest_0411 0.18 -2.6 446,792 - Psest_0411 0.18 +0.6 446,813 - Psest_0411 0.20 -0.7 446,813 - Psest_0411 0.20 -0.9 446,813 - Psest_0411 0.20 -0.6 446,950 + Psest_0411 0.33 -1.2 446,951 - Psest_0411 0.33 -3.1 446,951 - Psest_0411 0.33 -3.2 447,062 - Psest_0411 0.44 -0.8 447,064 + Psest_0411 0.44 -2.1 447,064 + Psest_0411 0.44 -2.6 447,064 + Psest_0411 0.44 -1.5 447,064 + Psest_0411 0.44 -3.2 447,064 + Psest_0411 0.44 +0.6 447,065 - Psest_0411 0.44 -0.8 447,065 - Psest_0411 0.44 -2.5 447,065 - Psest_0411 0.44 -0.4 447,065 - Psest_0411 0.44 -1.9 447,081 + Psest_0411 0.46 +0.2 447,094 + Psest_0411 0.47 -1.8 447,094 + Psest_0411 0.47 -1.0 447,095 - Psest_0411 0.47 -0.9 447,095 - Psest_0411 0.47 -2.7 447,095 - Psest_0411 0.47 -1.1 447,097 + Psest_0411 0.47 -1.3 447,124 + Psest_0411 0.50 -1.7 447,124 + Psest_0411 0.50 -2.5 447,124 + Psest_0411 0.50 -1.0 447,152 - Psest_0411 0.52 -2.1 447,152 - Psest_0411 0.52 +1.0 447,152 - Psest_0411 0.52 -2.4 447,152 - Psest_0411 0.52 -1.3 447,152 - Psest_0411 0.52 +0.4 447,152 - Psest_0411 0.52 -1.5 447,152 - Psest_0411 0.52 -0.6
Or see this region's nucleotide sequence