Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0400 and Psest_0401 are separated by 158 nucleotides Psest_0401 and Psest_0402 are separated by 20 nucleotides
Psest_0400: Psest_0400 - Geranylgeranyl pyrophosphate synthase, at 434,681 to 435,571
_0400
Psest_0401: Psest_0401 - isopentenyl-diphosphate delta-isomerase, type 2, at 435,730 to 436,770
_0401
Psest_0402: Psest_0402 - glycosyltransferase, MGT family, at 436,791 to 438,077
_0402
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.086 kb on + strand, within Psest_0400 at 435.087 kb on - strand, within Psest_0400 at 435.377 kb on + strand, within Psest_0400 at 435.377 kb on + strand, within Psest_0400 at 435.386 kb on + strand, within Psest_0400 at 435.386 kb on + strand, within Psest_0400 at 435.454 kb on + strand, within Psest_0400 at 435.455 kb on - strand, within Psest_0400 at 435.625 kb on - strand at 435.640 kb on + strand at 435.641 kb on - strand at 435.675 kb on + strand at 436.223 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.821 kb on + strand at 436.822 kb on - strand at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 435,086 + Psest_0400 0.45 +0.1 435,086 + Psest_0400 0.45 -1.5 435,086 + Psest_0400 0.45 -1.2 435,086 + Psest_0400 0.45 +1.0 435,086 + Psest_0400 0.45 -0.2 435,087 - Psest_0400 0.46 -0.3 435,377 + Psest_0400 0.78 +1.3 435,377 + Psest_0400 0.78 +1.1 435,386 + Psest_0400 0.79 -0.2 435,386 + Psest_0400 0.79 +0.2 435,454 + Psest_0400 0.87 -1.5 435,455 - Psest_0400 0.87 -1.1 435,625 - -0.3 435,640 + +0.7 435,641 - +0.6 435,675 + -0.7 436,223 + Psest_0401 0.47 +0.7 436,658 + Psest_0401 0.89 -0.2 436,658 + Psest_0401 0.89 +0.3 436,821 + -0.5 436,822 - +2.2 437,298 + Psest_0402 0.39 +2.4 437,298 + Psest_0402 0.39 +0.1 437,298 + Psest_0402 0.39 -2.6 437,298 + Psest_0402 0.39 +1.0 437,401 + Psest_0402 0.47 +0.6 437,401 + Psest_0402 0.47 +1.1
Or see this region's nucleotide sequence