Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2822

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2820 and Psest_2821 overlap by 4 nucleotidesPsest_2821 and Psest_2822 are separated by 131 nucleotidesPsest_2822 and Psest_2823 are separated by 33 nucleotidesPsest_2823 and Psest_2824 overlap by 4 nucleotides Psest_2820: Psest_2820 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 3,007,946 to 3,008,662 _2820 Psest_2821: Psest_2821 - Septum formation initiator, at 3,008,659 to 3,008,946 _2821 Psest_2822: Psest_2822 - phosphopyruvate hydratase, at 3,009,078 to 3,010,367 _2822 Psest_2823: Psest_2823 - 3-deoxy-8-phosphooctulonate synthase, at 3,010,401 to 3,011,246 _2823 Psest_2824: Psest_2824 - CTP synthase, at 3,011,243 to 3,012,874 _2824 Position (kb) 3009 3010 3011Strain fitness (log2 ratio) -1 0 1 2at 3008.925 kb on - strandat 3010.389 kb on - strandat 3010.389 kb on - strandat 3010.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,008,925 - -0.4
3,010,389 - -1.1
3,010,389 - -0.9
3,010,389 - +2.4

Or see this region's nucleotide sequence