Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0232

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0230 and Psest_0231 overlap by 8 nucleotidesPsest_0231 and Psest_0232 are separated by 97 nucleotidesPsest_0232 and Psest_0233 are separated by 98 nucleotides Psest_0230: Psest_0230 - Uncharacterized BCR, YitT family COG1284., at 239,336 to 239,983 _0230 Psest_0231: Psest_0231 - phosphoesterase, MJ0936 family, at 239,976 to 240,431 _0231 Psest_0232: Psest_0232 - Predicted dehydrogenase, at 240,529 to 241,647 _0232 Psest_0233: Psest_0233 - hypothetical protein, at 241,746 to 243,479 _0233 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.576 kb on + strand, within Psest_0230at 239.577 kb on - strand, within Psest_0230at 239.596 kb on + strand, within Psest_0230at 239.597 kb on - strand, within Psest_0230at 239.702 kb on + strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.703 kb on - strand, within Psest_0230at 239.966 kb on + strandat 239.966 kb on + strandat 239.967 kb on - strandat 239.967 kb on - strandat 239.978 kb on - strandat 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.085 kb on + strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.086 kb on - strand, within Psest_0231at 240.119 kb on + strand, within Psest_0231at 240.241 kb on - strand, within Psest_0231at 240.446 kb on + strandat 240.447 kb on - strandat 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.691 kb on + strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.692 kb on - strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.923 kb on + strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 240.924 kb on - strand, within Psest_0232at 241.155 kb on - strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.222 kb on + strand, within Psest_0232at 241.223 kb on - strand, within Psest_0232at 241.400 kb on - strand, within Psest_0232at 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.783 kb on - strandat 241.801 kb on + strandat 241.802 kb on - strandat 242.028 kb on + strand, within Psest_0233at 242.029 kb on - strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.031 kb on + strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.032 kb on - strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.085 kb on + strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.086 kb on - strand, within Psest_0233at 242.143 kb on - strand, within Psest_0233at 242.179 kb on + strand, within Psest_0233at 242.179 kb on + strand, within Psest_0233at 242.300 kb on + strand, within Psest_0233

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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239,576 + Psest_0230 0.37 +0.5
239,576 + Psest_0230 0.37 +0.3
239,576 + Psest_0230 0.37 +0.8
239,576 + Psest_0230 0.37 -0.9
239,576 + Psest_0230 0.37 +0.8
239,576 + Psest_0230 0.37 -1.3
239,576 + Psest_0230 0.37 +1.5
239,577 - Psest_0230 0.37 -0.5
239,596 + Psest_0230 0.40 +1.3
239,597 - Psest_0230 0.40 -0.3
239,702 + Psest_0230 0.56 -0.0
239,703 - Psest_0230 0.57 -1.6
239,703 - Psest_0230 0.57 +1.0
239,703 - Psest_0230 0.57 +0.5
239,703 - Psest_0230 0.57 +0.7
239,703 - Psest_0230 0.57 +2.1
239,966 + +0.7
239,966 + -0.2
239,967 - +0.3
239,967 - -0.1
239,978 - -0.5
240,085 + Psest_0231 0.24 +4.1
240,085 + Psest_0231 0.24 -0.5
240,085 + Psest_0231 0.24 +0.0
240,085 + Psest_0231 0.24 +0.2
240,085 + Psest_0231 0.24 -1.2
240,085 + Psest_0231 0.24 -1.5
240,086 - Psest_0231 0.24 +0.9
240,086 - Psest_0231 0.24 +0.7
240,086 - Psest_0231 0.24 +0.8
240,119 + Psest_0231 0.31 +1.5
240,241 - Psest_0231 0.58 -0.1
240,446 + +1.4
240,447 - -0.6
240,691 + Psest_0232 0.14 +0.1
240,691 + Psest_0232 0.14 -0.1
240,691 + Psest_0232 0.14 +2.0
240,691 + Psest_0232 0.14 -0.4
240,691 + Psest_0232 0.14 -0.3
240,691 + Psest_0232 0.14 -0.6
240,691 + Psest_0232 0.14 -0.8
240,691 + Psest_0232 0.14 -1.4
240,691 + Psest_0232 0.14 +1.8
240,691 + Psest_0232 0.14 +0.2
240,691 + Psest_0232 0.14 +0.2
240,691 + Psest_0232 0.14 +0.2
240,691 + Psest_0232 0.14 -0.7
240,692 - Psest_0232 0.15 -1.2
240,692 - Psest_0232 0.15 -0.9
240,692 - Psest_0232 0.15 -1.1
240,692 - Psest_0232 0.15 -0.8
240,692 - Psest_0232 0.15 +1.5
240,692 - Psest_0232 0.15 +1.2
240,692 - Psest_0232 0.15 +2.2
240,692 - Psest_0232 0.15 +1.6
240,923 + Psest_0232 0.35 -1.0
240,923 + Psest_0232 0.35 -0.2
240,923 + Psest_0232 0.35 +2.3
240,923 + Psest_0232 0.35 -0.9
240,923 + Psest_0232 0.35 -2.2
240,923 + Psest_0232 0.35 +0.8
240,923 + Psest_0232 0.35 +0.9
240,924 - Psest_0232 0.35 +0.3
240,924 - Psest_0232 0.35 +0.4
240,924 - Psest_0232 0.35 +1.0
240,924 - Psest_0232 0.35 +0.4
240,924 - Psest_0232 0.35 +2.0
240,924 - Psest_0232 0.35 -2.0
240,924 - Psest_0232 0.35 +0.1
241,155 - Psest_0232 0.56 +2.4
241,222 + Psest_0232 0.62 +0.9
241,222 + Psest_0232 0.62 +1.0
241,222 + Psest_0232 0.62 +0.7
241,223 - Psest_0232 0.62 +0.6
241,400 - Psest_0232 0.78 -1.3
241,783 - -0.2
241,783 - -0.2
241,783 - -0.3
241,783 - +0.4
241,783 - +1.6
241,783 - +0.4
241,801 + +0.7
241,802 - -0.9
242,028 + Psest_0233 0.16 -2.1
242,029 - Psest_0233 0.16 +1.5
242,031 + Psest_0233 0.16 -0.8
242,031 + Psest_0233 0.16 -0.4
242,031 + Psest_0233 0.16 -1.2
242,031 + Psest_0233 0.16 +0.3
242,032 - Psest_0233 0.16 -0.6
242,032 - Psest_0233 0.16 -0.1
242,032 - Psest_0233 0.16 +0.3
242,085 + Psest_0233 0.20 +4.2
242,085 + Psest_0233 0.20 -1.6
242,085 + Psest_0233 0.20 +0.2
242,085 + Psest_0233 0.20 -1.1
242,085 + Psest_0233 0.20 -1.7
242,085 + Psest_0233 0.20 +2.1
242,085 + Psest_0233 0.20 +0.2
242,085 + Psest_0233 0.20 +1.4
242,085 + Psest_0233 0.20 -0.4
242,085 + Psest_0233 0.20 +1.6
242,085 + Psest_0233 0.20 -0.5
242,086 - Psest_0233 0.20 +0.3
242,086 - Psest_0233 0.20 +1.0
242,086 - Psest_0233 0.20 +0.9
242,086 - Psest_0233 0.20 -1.1
242,086 - Psest_0233 0.20 +0.2
242,086 - Psest_0233 0.20 -1.8
242,086 - Psest_0233 0.20 -0.6
242,086 - Psest_0233 0.20 +1.6
242,086 - Psest_0233 0.20 +0.2
242,143 - Psest_0233 0.23 +1.0
242,179 + Psest_0233 0.25 -0.1
242,179 + Psest_0233 0.25 -0.1
242,300 + Psest_0233 0.32 -1.4

Or see this region's nucleotide sequence