Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1397

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1395 and Psest_1396 are separated by 122 nucleotidesPsest_1396 and Psest_1397 are separated by 36 nucleotidesPsest_1397 and Psest_1398 overlap by 56 nucleotidesPsest_1398 and Psest_1399 are separated by 4 nucleotides Psest_1395: Psest_1395 - Short-chain alcohol dehydrogenase of unknown specificity, at 1,503,815 to 1,504,552 _1395 Psest_1396: Psest_1396 - Cytosine/adenosine deaminases, at 1,504,675 to 1,505,145 _1396 Psest_1397: Psest_1397 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,505,182 to 1,506,018 _1397 Psest_1398: Psest_1398 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,505,963 to 1,506,766 _1398 Psest_1399: Psest_1399 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,506,771 to 1,507,748 _1399 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2at 1504.454 kb on + strand, within Psest_1395at 1504.454 kb on + strand, within Psest_1395at 1504.455 kb on - strand, within Psest_1395at 1504.527 kb on - strandat 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.910 kb on + strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1504.911 kb on - strand, within Psest_1396at 1505.009 kb on + strand, within Psest_1396at 1505.009 kb on + strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.010 kb on - strand, within Psest_1396at 1505.166 kb on + strandat 1505.166 kb on + strandat 1505.436 kb on - strand, within Psest_1397at 1505.456 kb on + strand, within Psest_1397at 1505.778 kb on + strand, within Psest_1397at 1505.778 kb on + strand, within Psest_1397at 1505.779 kb on - strand, within Psest_1397at 1505.779 kb on - strand, within Psest_1397at 1506.193 kb on + strand, within Psest_1398at 1506.194 kb on - strand, within Psest_1398at 1506.194 kb on - strand, within Psest_1398at 1506.420 kb on + strand, within Psest_1398at 1506.421 kb on - strand, within Psest_1398at 1506.421 kb on - strand, within Psest_1398at 1506.421 kb on - strand, within Psest_1398at 1506.421 kb on - strand, within Psest_1398at 1506.534 kb on + strand, within Psest_1398at 1506.534 kb on + strand, within Psest_1398at 1506.534 kb on + strand, within Psest_1398at 1506.535 kb on - strand, within Psest_1398at 1506.535 kb on - strand, within Psest_1398at 1506.535 kb on - strand, within Psest_1398at 1506.535 kb on - strand, within Psest_1398at 1506.563 kb on + strand, within Psest_1398at 1506.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,504,454 + Psest_1395 0.87 +0.8
1,504,454 + Psest_1395 0.87 -0.2
1,504,455 - Psest_1395 0.87 -0.1
1,504,527 - +1.1
1,504,910 + Psest_1396 0.50 +2.2
1,504,910 + Psest_1396 0.50 -0.4
1,504,910 + Psest_1396 0.50 -0.3
1,504,910 + Psest_1396 0.50 +1.1
1,504,910 + Psest_1396 0.50 +1.8
1,504,910 + Psest_1396 0.50 -1.2
1,504,910 + Psest_1396 0.50 -0.6
1,504,910 + Psest_1396 0.50 +0.0
1,504,910 + Psest_1396 0.50 -0.1
1,504,910 + Psest_1396 0.50 -0.7
1,504,910 + Psest_1396 0.50 +0.1
1,504,910 + Psest_1396 0.50 +0.1
1,504,911 - Psest_1396 0.50 -1.4
1,504,911 - Psest_1396 0.50 +1.4
1,504,911 - Psest_1396 0.50 +0.0
1,504,911 - Psest_1396 0.50 -0.1
1,504,911 - Psest_1396 0.50 +0.9
1,504,911 - Psest_1396 0.50 +1.5
1,504,911 - Psest_1396 0.50 +1.6
1,504,911 - Psest_1396 0.50 +0.2
1,504,911 - Psest_1396 0.50 +1.0
1,504,911 - Psest_1396 0.50 -0.2
1,504,911 - Psest_1396 0.50 -0.2
1,505,009 + Psest_1396 0.71 -0.3
1,505,009 + Psest_1396 0.71 +0.9
1,505,010 - Psest_1396 0.71 -1.3
1,505,010 - Psest_1396 0.71 -0.8
1,505,010 - Psest_1396 0.71 -0.4
1,505,010 - Psest_1396 0.71 +1.2
1,505,010 - Psest_1396 0.71 -0.5
1,505,010 - Psest_1396 0.71 +0.0
1,505,010 - Psest_1396 0.71 -0.9
1,505,010 - Psest_1396 0.71 +0.5
1,505,166 + -1.8
1,505,166 + -1.0
1,505,436 - Psest_1397 0.30 +1.4
1,505,456 + Psest_1397 0.33 +1.3
1,505,778 + Psest_1397 0.71 +2.0
1,505,778 + Psest_1397 0.71 -0.1
1,505,779 - Psest_1397 0.71 +0.4
1,505,779 - Psest_1397 0.71 +0.6
1,506,193 + Psest_1398 0.29 +0.7
1,506,194 - Psest_1398 0.29 +0.2
1,506,194 - Psest_1398 0.29 +0.1
1,506,420 + Psest_1398 0.57 -0.8
1,506,421 - Psest_1398 0.57 +1.8
1,506,421 - Psest_1398 0.57 +1.6
1,506,421 - Psest_1398 0.57 +1.2
1,506,421 - Psest_1398 0.57 -0.1
1,506,534 + Psest_1398 0.71 +0.6
1,506,534 + Psest_1398 0.71 -0.1
1,506,534 + Psest_1398 0.71 -1.1
1,506,535 - Psest_1398 0.71 +1.2
1,506,535 - Psest_1398 0.71 -0.2
1,506,535 - Psest_1398 0.71 +0.4
1,506,535 - Psest_1398 0.71 +1.1
1,506,563 + Psest_1398 0.75 -1.3
1,506,858 - -1.6

Or see this region's nucleotide sequence