Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4310

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4308 and Psest_4309 overlap by 4 nucleotidesPsest_4309 and Psest_4310 are separated by 12 nucleotidesPsest_4310 and Psest_4311 overlap by 1 nucleotidesPsest_4311 and Psest_4312 are separated by 44 nucleotides Psest_4308: Psest_4308 - Fe2+/Zn2+ uptake regulation proteins, at 4,507,590 to 4,508,075 _4308 Psest_4309: Psest_4309 - ABC-type Mn/Zn transport systems, ATPase component, at 4,508,072 to 4,508,842 _4309 Psest_4310: Psest_4310 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 4,508,855 to 4,509,640 _4310 Psest_4311: Psest_4311 - Predicted metal-dependent hydrolase, at 4,509,640 to 4,510,161 _4311 Psest_4312: Psest_4312 - anion transporter, at 4,510,206 to 4,511,693 _4312 Position (kb) 4508 4509 4510Strain fitness (log2 ratio) -3 -2 -1 0 1at 4508.082 kb on + strandat 4508.082 kb on + strandat 4508.082 kb on + strandat 4508.552 kb on + strand, within Psest_4309at 4508.753 kb on + strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.754 kb on - strand, within Psest_4309at 4508.840 kb on + strandat 4508.840 kb on + strandat 4508.841 kb on - strandat 4508.841 kb on - strandat 4508.951 kb on + strand, within Psest_4310at 4508.952 kb on - strand, within Psest_4310at 4509.194 kb on + strand, within Psest_4310at 4509.655 kb on + strandat 4509.655 kb on + strandat 4509.655 kb on + strandat 4509.656 kb on - strandat 4509.656 kb on - strandat 4509.656 kb on - strandat 4509.727 kb on + strand, within Psest_4311at 4509.782 kb on - strand, within Psest_4311at 4509.787 kb on + strand, within Psest_4311at 4509.787 kb on + strand, within Psest_4311at 4509.787 kb on + strand, within Psest_4311at 4509.812 kb on - strand, within Psest_4311at 4509.812 kb on - strand, within Psest_4311at 4509.847 kb on + strand, within Psest_4311at 4509.847 kb on + strand, within Psest_4311at 4509.847 kb on + strand, within Psest_4311at 4509.847 kb on + strand, within Psest_4311at 4509.848 kb on - strand, within Psest_4311at 4509.848 kb on - strand, within Psest_4311at 4509.848 kb on - strand, within Psest_4311at 4509.848 kb on - strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.045 kb on + strand, within Psest_4311at 4510.046 kb on - strand, within Psest_4311at 4510.046 kb on - strand, within Psest_4311at 4510.046 kb on - strand, within Psest_4311at 4510.046 kb on - strand, within Psest_4311at 4510.190 kb on + strandat 4510.190 kb on + strandat 4510.190 kb on + strandat 4510.190 kb on + strandat 4510.191 kb on - strandat 4510.191 kb on - strandat 4510.372 kb on + strand, within Psest_4312at 4510.621 kb on - strand, within Psest_4312

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,508,082 + -0.4
4,508,082 + -0.1
4,508,082 + -0.4
4,508,552 + Psest_4309 0.62 -1.0
4,508,753 + Psest_4309 0.88 +0.5
4,508,754 - Psest_4309 0.88 -0.0
4,508,754 - Psest_4309 0.88 -1.1
4,508,754 - Psest_4309 0.88 +0.3
4,508,754 - Psest_4309 0.88 -3.0
4,508,754 - Psest_4309 0.88 -0.3
4,508,754 - Psest_4309 0.88 +0.1
4,508,754 - Psest_4309 0.88 +1.5
4,508,754 - Psest_4309 0.88 +1.0
4,508,840 + -2.3
4,508,840 + +1.0
4,508,841 - +0.6
4,508,841 - +1.4
4,508,951 + Psest_4310 0.12 -0.3
4,508,952 - Psest_4310 0.12 -1.3
4,509,194 + Psest_4310 0.43 -0.2
4,509,655 + +0.1
4,509,655 + +0.6
4,509,655 + -0.2
4,509,656 - +1.2
4,509,656 - +1.4
4,509,656 - +1.2
4,509,727 + Psest_4311 0.17 -0.3
4,509,782 - Psest_4311 0.27 +0.3
4,509,787 + Psest_4311 0.28 +0.9
4,509,787 + Psest_4311 0.28 -1.6
4,509,787 + Psest_4311 0.28 +0.2
4,509,812 - Psest_4311 0.33 -0.1
4,509,812 - Psest_4311 0.33 +1.0
4,509,847 + Psest_4311 0.40 -1.0
4,509,847 + Psest_4311 0.40 -1.9
4,509,847 + Psest_4311 0.40 +0.6
4,509,847 + Psest_4311 0.40 +1.3
4,509,848 - Psest_4311 0.40 +0.8
4,509,848 - Psest_4311 0.40 -0.1
4,509,848 - Psest_4311 0.40 +1.7
4,509,848 - Psest_4311 0.40 +0.9
4,510,045 + Psest_4311 0.78 -1.1
4,510,045 + Psest_4311 0.78 -1.5
4,510,045 + Psest_4311 0.78 +0.4
4,510,045 + Psest_4311 0.78 +0.4
4,510,045 + Psest_4311 0.78 -0.5
4,510,045 + Psest_4311 0.78 +1.3
4,510,046 - Psest_4311 0.78 +1.6
4,510,046 - Psest_4311 0.78 -0.5
4,510,046 - Psest_4311 0.78 +0.3
4,510,046 - Psest_4311 0.78 -0.4
4,510,190 + -1.6
4,510,190 + -2.6
4,510,190 + +0.9
4,510,190 + -1.1
4,510,191 - -0.3
4,510,191 - -0.0
4,510,372 + Psest_4312 0.11 +0.2
4,510,621 - Psest_4312 0.28 +0.0

Or see this region's nucleotide sequence