Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3910

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3909 and Psest_3910 are separated by 152 nucleotidesPsest_3910 and Psest_3911 are separated by 63 nucleotides Psest_3909: Psest_3909 - Glucose/sorbosone dehydrogenases, at 4,077,771 to 4,079,039 _3909 Psest_3910: Psest_3910 - Uncharacterized protein conserved in bacteria, at 4,079,192 to 4,079,650 _3910 Psest_3911: Psest_3911 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,079,714 to 4,081,102 _3911 Position (kb) 4079 4080Strain fitness (log2 ratio) -2 -1 0 1at 4078.297 kb on + strand, within Psest_3909at 4078.297 kb on + strand, within Psest_3909at 4078.297 kb on + strand, within Psest_3909at 4078.298 kb on - strand, within Psest_3909at 4078.298 kb on - strand, within Psest_3909at 4078.298 kb on - strand, within Psest_3909at 4078.334 kb on - strand, within Psest_3909at 4078.396 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.498 kb on + strand, within Psest_3909at 4078.499 kb on - strand, within Psest_3909at 4078.570 kb on + strand, within Psest_3909at 4078.571 kb on - strand, within Psest_3909at 4078.571 kb on - strand, within Psest_3909at 4078.816 kb on + strand, within Psest_3909at 4079.164 kb on + strandat 4079.165 kb on - strandat 4079.165 kb on - strandat 4079.367 kb on - strand, within Psest_3910at 4079.367 kb on - strand, within Psest_3910at 4079.455 kb on - strand, within Psest_3910at 4079.617 kb on - strandat 4079.745 kb on + strandat 4079.826 kb on + strandat 4079.826 kb on + strandat 4079.826 kb on + strandat 4079.827 kb on - strandat 4079.873 kb on - strand, within Psest_3911at 4079.923 kb on - strand, within Psest_3911at 4080.263 kb on + strand, within Psest_3911at 4080.263 kb on + strand, within Psest_3911at 4080.263 kb on + strand, within Psest_3911at 4080.263 kb on + strand, within Psest_3911at 4080.263 kb on + strand, within Psest_3911at 4080.264 kb on - strand, within Psest_3911at 4080.264 kb on - strand, within Psest_3911at 4080.264 kb on - strand, within Psest_3911at 4080.264 kb on - strand, within Psest_3911at 4080.264 kb on - strand, within Psest_3911at 4080.434 kb on - strand, within Psest_3911at 4080.434 kb on - strand, within Psest_3911

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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4,078,297 + Psest_3909 0.41 -1.7
4,078,297 + Psest_3909 0.41 +1.1
4,078,297 + Psest_3909 0.41 -0.0
4,078,298 - Psest_3909 0.42 +0.2
4,078,298 - Psest_3909 0.42 +0.7
4,078,298 - Psest_3909 0.42 +0.9
4,078,334 - Psest_3909 0.44 +0.3
4,078,396 + Psest_3909 0.49 -0.1
4,078,498 + Psest_3909 0.57 -1.3
4,078,498 + Psest_3909 0.57 -0.4
4,078,498 + Psest_3909 0.57 -0.3
4,078,498 + Psest_3909 0.57 +0.0
4,078,498 + Psest_3909 0.57 +0.5
4,078,498 + Psest_3909 0.57 -1.8
4,078,498 + Psest_3909 0.57 -1.6
4,078,499 - Psest_3909 0.57 -0.1
4,078,570 + Psest_3909 0.63 -0.3
4,078,571 - Psest_3909 0.63 +0.2
4,078,571 - Psest_3909 0.63 +0.6
4,078,816 + Psest_3909 0.82 +0.4
4,079,164 + -1.4
4,079,165 - +0.3
4,079,165 - -0.8
4,079,367 - Psest_3910 0.38 -2.6
4,079,367 - Psest_3910 0.38 -0.8
4,079,455 - Psest_3910 0.57 -0.8
4,079,617 - -0.7
4,079,745 + +0.4
4,079,826 + +0.4
4,079,826 + -2.0
4,079,826 + +0.1
4,079,827 - -0.8
4,079,873 - Psest_3911 0.11 -1.7
4,079,923 - Psest_3911 0.15 +1.2
4,080,263 + Psest_3911 0.40 +0.5
4,080,263 + Psest_3911 0.40 +0.0
4,080,263 + Psest_3911 0.40 +0.5
4,080,263 + Psest_3911 0.40 +0.3
4,080,263 + Psest_3911 0.40 -0.4
4,080,264 - Psest_3911 0.40 -1.3
4,080,264 - Psest_3911 0.40 -1.4
4,080,264 - Psest_3911 0.40 -0.7
4,080,264 - Psest_3911 0.40 -0.9
4,080,264 - Psest_3911 0.40 -0.1
4,080,434 - Psest_3911 0.52 -0.4
4,080,434 - Psest_3911 0.52 -0.6

Or see this region's nucleotide sequence