Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3721

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3720 and Psest_3721 are separated by 65 nucleotidesPsest_3721 and Psest_3722 are separated by 156 nucleotidesPsest_3722 and Psest_3723 are separated by 20 nucleotides Psest_3720: Psest_3720 - penicillin-binding protein, 1A family, at 3,887,967 to 3,890,396 _3720 Psest_3721: Psest_3721 - Malic enzyme, at 3,890,462 to 3,891,730 _3721 Psest_3722: Psest_3722 - Micrococcal nuclease (thermonuclease) homologs, at 3,891,887 to 3,892,684 _3722 Psest_3723: Psest_3723 - ribosomal protein L31, at 3,892,705 to 3,892,917 _3723 Position (kb) 3890 3891 3892Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3889.513 kb on + strand, within Psest_3720at 3889.514 kb on - strand, within Psest_3720at 3889.514 kb on - strand, within Psest_3720at 3889.514 kb on - strand, within Psest_3720at 3889.514 kb on - strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.515 kb on + strand, within Psest_3720at 3889.516 kb on - strand, within Psest_3720at 3889.516 kb on - strand, within Psest_3720at 3889.516 kb on - strand, within Psest_3720at 3889.516 kb on - strand, within Psest_3720at 3889.516 kb on - strand, within Psest_3720at 3889.581 kb on + strand, within Psest_3720at 3889.582 kb on - strand, within Psest_3720at 3889.582 kb on - strand, within Psest_3720at 3889.582 kb on - strand, within Psest_3720at 3889.582 kb on - strand, within Psest_3720at 3889.582 kb on - strand, within Psest_3720at 3889.719 kb on + strand, within Psest_3720at 3889.760 kb on - strand, within Psest_3720at 3889.914 kb on - strand, within Psest_3720at 3889.920 kb on + strand, within Psest_3720at 3889.921 kb on - strand, within Psest_3720at 3889.921 kb on - strand, within Psest_3720at 3889.921 kb on - strand, within Psest_3720at 3889.921 kb on - strand, within Psest_3720at 3890.053 kb on - strand, within Psest_3720at 3890.159 kb on + strandat 3890.277 kb on + strandat 3890.421 kb on + strandat 3890.421 kb on + strandat 3890.422 kb on - strandat 3890.474 kb on + strandat 3890.475 kb on - strandat 3890.475 kb on - strandat 3890.500 kb on - strandat 3890.607 kb on + strand, within Psest_3721at 3890.607 kb on + strand, within Psest_3721at 3890.607 kb on + strand, within Psest_3721at 3890.607 kb on + strand, within Psest_3721at 3890.783 kb on - strand, within Psest_3721at 3891.030 kb on + strand, within Psest_3721at 3891.030 kb on + strand, within Psest_3721at 3891.030 kb on + strand, within Psest_3721at 3891.030 kb on + strand, within Psest_3721at 3891.031 kb on - strand, within Psest_3721at 3891.031 kb on - strand, within Psest_3721at 3891.031 kb on - strand, within Psest_3721at 3891.089 kb on - strand, within Psest_3721at 3891.358 kb on + strand, within Psest_3721at 3891.358 kb on + strand, within Psest_3721at 3891.358 kb on + strand, within Psest_3721at 3891.359 kb on - strand, within Psest_3721at 3891.359 kb on - strand, within Psest_3721at 3891.527 kb on - strand, within Psest_3721at 3891.556 kb on - strand, within Psest_3721at 3891.618 kb on + strandat 3891.619 kb on - strandat 3891.776 kb on + strandat 3891.777 kb on - strandat 3891.777 kb on - strandat 3891.837 kb on + strandat 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.055 kb on + strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.056 kb on - strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.057 kb on + strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.058 kb on - strand, within Psest_3722at 3892.332 kb on + strand, within Psest_3722at 3892.332 kb on + strand, within Psest_3722at 3892.333 kb on - strand, within Psest_3722at 3892.489 kb on + strand, within Psest_3722at 3892.489 kb on + strand, within Psest_3722at 3892.665 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strandat 3892.707 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
3,889,513 + Psest_3720 0.64 +1.0
3,889,514 - Psest_3720 0.64 +0.0
3,889,514 - Psest_3720 0.64 +0.5
3,889,514 - Psest_3720 0.64 -0.3
3,889,514 - Psest_3720 0.64 -0.5
3,889,515 + Psest_3720 0.64 +0.3
3,889,515 + Psest_3720 0.64 +0.9
3,889,515 + Psest_3720 0.64 -0.7
3,889,515 + Psest_3720 0.64 +0.9
3,889,515 + Psest_3720 0.64 +1.6
3,889,515 + Psest_3720 0.64 -0.1
3,889,515 + Psest_3720 0.64 -0.1
3,889,516 - Psest_3720 0.64 -1.2
3,889,516 - Psest_3720 0.64 -0.7
3,889,516 - Psest_3720 0.64 +0.7
3,889,516 - Psest_3720 0.64 +0.7
3,889,516 - Psest_3720 0.64 +0.7
3,889,581 + Psest_3720 0.66 -0.3
3,889,582 - Psest_3720 0.66 +0.4
3,889,582 - Psest_3720 0.66 +0.1
3,889,582 - Psest_3720 0.66 -1.0
3,889,582 - Psest_3720 0.66 -0.7
3,889,582 - Psest_3720 0.66 -0.1
3,889,719 + Psest_3720 0.72 -0.2
3,889,760 - Psest_3720 0.74 -0.4
3,889,914 - Psest_3720 0.80 +0.3
3,889,920 + Psest_3720 0.80 +0.0
3,889,921 - Psest_3720 0.80 -0.1
3,889,921 - Psest_3720 0.80 -0.0
3,889,921 - Psest_3720 0.80 +0.8
3,889,921 - Psest_3720 0.80 +2.2
3,890,053 - Psest_3720 0.86 +0.9
3,890,159 + -0.9
3,890,277 + -0.7
3,890,421 + +0.5
3,890,421 + +0.6
3,890,422 - +0.8
3,890,474 + -2.1
3,890,475 - -1.0
3,890,475 - -0.3
3,890,500 - -0.8
3,890,607 + Psest_3721 0.11 -1.0
3,890,607 + Psest_3721 0.11 -2.4
3,890,607 + Psest_3721 0.11 -2.1
3,890,607 + Psest_3721 0.11 -3.0
3,890,783 - Psest_3721 0.25 -1.2
3,891,030 + Psest_3721 0.45 -2.6
3,891,030 + Psest_3721 0.45 -2.2
3,891,030 + Psest_3721 0.45 -2.9
3,891,030 + Psest_3721 0.45 -3.5
3,891,031 - Psest_3721 0.45 -3.3
3,891,031 - Psest_3721 0.45 -1.7
3,891,031 - Psest_3721 0.45 -1.2
3,891,089 - Psest_3721 0.49 -3.0
3,891,358 + Psest_3721 0.71 -0.3
3,891,358 + Psest_3721 0.71 -1.7
3,891,358 + Psest_3721 0.71 -0.4
3,891,359 - Psest_3721 0.71 -2.4
3,891,359 - Psest_3721 0.71 -1.4
3,891,527 - Psest_3721 0.84 -2.4
3,891,556 - Psest_3721 0.86 -4.0
3,891,618 + -2.8
3,891,619 - -2.8
3,891,776 + -0.9
3,891,777 - +0.1
3,891,777 - -0.7
3,891,837 + -0.0
3,892,055 + Psest_3722 0.21 +0.1
3,892,055 + Psest_3722 0.21 -0.2
3,892,055 + Psest_3722 0.21 -0.3
3,892,055 + Psest_3722 0.21 +1.6
3,892,055 + Psest_3722 0.21 -1.0
3,892,055 + Psest_3722 0.21 +0.1
3,892,055 + Psest_3722 0.21 -0.8
3,892,055 + Psest_3722 0.21 +0.0
3,892,055 + Psest_3722 0.21 -0.7
3,892,055 + Psest_3722 0.21 +0.5
3,892,055 + Psest_3722 0.21 +0.0
3,892,055 + Psest_3722 0.21 +0.4
3,892,055 + Psest_3722 0.21 +0.1
3,892,055 + Psest_3722 0.21 +0.8
3,892,055 + Psest_3722 0.21 +0.9
3,892,055 + Psest_3722 0.21 +0.1
3,892,055 + Psest_3722 0.21 +1.2
3,892,056 - Psest_3722 0.21 -1.0
3,892,056 - Psest_3722 0.21 -0.3
3,892,056 - Psest_3722 0.21 -0.8
3,892,056 - Psest_3722 0.21 +0.7
3,892,056 - Psest_3722 0.21 +0.2
3,892,056 - Psest_3722 0.21 -0.4
3,892,056 - Psest_3722 0.21 +1.6
3,892,056 - Psest_3722 0.21 +0.3
3,892,056 - Psest_3722 0.21 -0.3
3,892,056 - Psest_3722 0.21 -1.2
3,892,056 - Psest_3722 0.21 +0.2
3,892,056 - Psest_3722 0.21 -0.1
3,892,056 - Psest_3722 0.21 +0.9
3,892,056 - Psest_3722 0.21 +0.8
3,892,056 - Psest_3722 0.21 +0.8
3,892,056 - Psest_3722 0.21 +0.4
3,892,056 - Psest_3722 0.21 -0.5
3,892,057 + Psest_3722 0.21 -0.4
3,892,057 + Psest_3722 0.21 +0.3
3,892,057 + Psest_3722 0.21 -0.1
3,892,057 + Psest_3722 0.21 +1.0
3,892,057 + Psest_3722 0.21 -0.7
3,892,057 + Psest_3722 0.21 +0.4
3,892,057 + Psest_3722 0.21 +0.1
3,892,057 + Psest_3722 0.21 -0.5
3,892,057 + Psest_3722 0.21 +0.2
3,892,057 + Psest_3722 0.21 +0.5
3,892,057 + Psest_3722 0.21 +0.6
3,892,057 + Psest_3722 0.21 +1.1
3,892,058 - Psest_3722 0.21 -2.0
3,892,058 - Psest_3722 0.21 +0.2
3,892,058 - Psest_3722 0.21 -0.8
3,892,058 - Psest_3722 0.21 -1.1
3,892,058 - Psest_3722 0.21 +0.4
3,892,058 - Psest_3722 0.21 +1.0
3,892,058 - Psest_3722 0.21 -1.4
3,892,058 - Psest_3722 0.21 -2.0
3,892,058 - Psest_3722 0.21 +0.8
3,892,058 - Psest_3722 0.21 +0.3
3,892,058 - Psest_3722 0.21 +0.4
3,892,058 - Psest_3722 0.21 +0.4
3,892,058 - Psest_3722 0.21 -0.2
3,892,058 - Psest_3722 0.21 +0.3
3,892,058 - Psest_3722 0.21 -2.7
3,892,058 - Psest_3722 0.21 +0.4
3,892,332 + Psest_3722 0.56 +0.1
3,892,332 + Psest_3722 0.56 -0.7
3,892,333 - Psest_3722 0.56 -0.2
3,892,489 + Psest_3722 0.75 -1.0
3,892,489 + Psest_3722 0.75 -1.4
3,892,665 - +1.4
3,892,707 - +0.0
3,892,707 - -0.3
3,892,707 - -0.7
3,892,707 - +0.9
3,892,707 - +0.0

Or see this region's nucleotide sequence