Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2757

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2755 and Psest_2756 are separated by 93 nucleotidesPsest_2756 and Psest_2757 are separated by 138 nucleotidesPsest_2757 and Psest_2758 are separated by 132 nucleotidesPsest_2758 and Psest_2759 are separated by 62 nucleotides Psest_2755: Psest_2755 - Gluconolactonase, at 2,944,614 to 2,945,705 _2755 Psest_2756: Psest_2756 - hypothetical protein, at 2,945,799 to 2,945,921 _2756 Psest_2757: Psest_2757 - hypothetical protein, at 2,946,060 to 2,946,209 _2757 Psest_2758: Psest_2758 - Predicted transcriptional regulators, at 2,946,342 to 2,946,743 _2758 Psest_2759: Psest_2759 - Co/Zn/Cd efflux system component, at 2,946,806 to 2,947,453 _2759 Position (kb) 2946 2947Strain fitness (log2 ratio) -2 -1 0 1 2at 2945.100 kb on + strand, within Psest_2755at 2945.100 kb on + strand, within Psest_2755at 2945.100 kb on + strand, within Psest_2755at 2945.101 kb on - strand, within Psest_2755at 2945.101 kb on - strand, within Psest_2755at 2945.193 kb on + strand, within Psest_2755at 2945.196 kb on + strand, within Psest_2755at 2945.196 kb on + strand, within Psest_2755at 2945.196 kb on + strand, within Psest_2755at 2945.196 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.334 kb on + strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.335 kb on - strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.379 kb on + strand, within Psest_2755at 2945.664 kb on + strandat 2945.664 kb on + strandat 2945.665 kb on - strandat 2945.665 kb on - strandat 2945.673 kb on + strandat 2945.673 kb on + strandat 2945.674 kb on - strandat 2945.800 kb on + strandat 2945.800 kb on + strandat 2945.801 kb on - strandat 2945.801 kb on - strandat 2945.801 kb on - strandat 2945.901 kb on + strand, within Psest_2756at 2945.901 kb on + strand, within Psest_2756at 2945.961 kb on - strandat 2945.987 kb on + strandat 2946.152 kb on - strand, within Psest_2757at 2946.161 kb on - strand, within Psest_2757at 2946.292 kb on + strandat 2946.292 kb on + strandat 2946.293 kb on - strandat 2946.293 kb on - strandat 2946.343 kb on + strandat 2946.343 kb on + strandat 2946.344 kb on - strandat 2946.487 kb on - strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.682 kb on + strand, within Psest_2758at 2946.757 kb on - strandat 2946.992 kb on + strand, within Psest_2759at 2947.083 kb on + strand, within Psest_2759at 2947.182 kb on + strand, within Psest_2759at 2947.182 kb on + strand, within Psest_2759at 2947.183 kb on - strand, within Psest_2759at 2947.183 kb on - strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,945,100 + Psest_2755 0.45 +0.2
2,945,100 + Psest_2755 0.45 -0.1
2,945,100 + Psest_2755 0.45 +0.7
2,945,101 - Psest_2755 0.45 +0.1
2,945,101 - Psest_2755 0.45 +0.2
2,945,193 + Psest_2755 0.53 +0.1
2,945,196 + Psest_2755 0.53 +1.8
2,945,196 + Psest_2755 0.53 -0.1
2,945,196 + Psest_2755 0.53 -0.6
2,945,196 + Psest_2755 0.53 +0.3
2,945,334 + Psest_2755 0.66 +0.2
2,945,334 + Psest_2755 0.66 +0.7
2,945,334 + Psest_2755 0.66 -0.7
2,945,334 + Psest_2755 0.66 +0.1
2,945,334 + Psest_2755 0.66 +0.6
2,945,334 + Psest_2755 0.66 -0.1
2,945,335 - Psest_2755 0.66 +0.4
2,945,335 - Psest_2755 0.66 -0.0
2,945,335 - Psest_2755 0.66 -0.1
2,945,335 - Psest_2755 0.66 +0.7
2,945,335 - Psest_2755 0.66 -0.1
2,945,335 - Psest_2755 0.66 -0.1
2,945,335 - Psest_2755 0.66 +0.1
2,945,379 + Psest_2755 0.70 -0.5
2,945,379 + Psest_2755 0.70 +1.0
2,945,379 + Psest_2755 0.70 +0.6
2,945,379 + Psest_2755 0.70 -0.1
2,945,379 + Psest_2755 0.70 -2.1
2,945,379 + Psest_2755 0.70 +0.5
2,945,664 + -0.7
2,945,664 + +0.0
2,945,665 - +0.5
2,945,665 - -0.9
2,945,673 + +0.3
2,945,673 + -1.3
2,945,674 - -1.2
2,945,800 + +0.0
2,945,800 + -0.2
2,945,801 - -0.3
2,945,801 - +0.2
2,945,801 - +0.2
2,945,901 + Psest_2756 0.83 -0.9
2,945,901 + Psest_2756 0.83 +1.1
2,945,961 - +2.0
2,945,987 + -0.1
2,946,152 - Psest_2757 0.61 -0.6
2,946,161 - Psest_2757 0.67 -0.1
2,946,292 + -0.7
2,946,292 + +0.0
2,946,293 - +0.7
2,946,293 - +0.2
2,946,343 + -0.1
2,946,343 + +0.6
2,946,344 - -0.2
2,946,487 - Psest_2758 0.36 -0.1
2,946,679 + Psest_2758 0.84 -0.4
2,946,679 + Psest_2758 0.84 -0.2
2,946,679 + Psest_2758 0.84 +0.4
2,946,682 + Psest_2758 0.85 -0.0
2,946,757 - -0.2
2,946,992 + Psest_2759 0.29 -1.1
2,947,083 + Psest_2759 0.43 +0.8
2,947,182 + Psest_2759 0.58 -0.2
2,947,182 + Psest_2759 0.58 -0.3
2,947,183 - Psest_2759 0.58 +0.8
2,947,183 - Psest_2759 0.58 +0.4
2,947,202 + Psest_2759 0.61 +0.5
2,947,202 + Psest_2759 0.61 -0.2
2,947,202 + Psest_2759 0.61 -0.7
2,947,202 + Psest_2759 0.61 -0.2
2,947,202 + Psest_2759 0.61 +0.6
2,947,202 + Psest_2759 0.61 +0.3
2,947,203 - Psest_2759 0.61 -0.0
2,947,203 - Psest_2759 0.61 +0.3
2,947,203 - Psest_2759 0.61 +0.6

Or see this region's nucleotide sequence